View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13331_high_12 (Length: 380)
Name: NF13331_high_12
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 14 - 187
Target Start/End: Original strand, 31906435 - 31906608
Alignment:
| Q |
14 |
atcaataaggataatttcgtcatttcactttagcaacaaccttttatattggcaccacctaatgaaatttccttgtcttttcatttctaaaccaaaatca |
113 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31906435 |
atcaataaggacaatttcgtcatttcactttagcaacaaccttttatattggcaccacgtaatgaaatttccctgtcttttcatttctaaaccaaaatca |
31906534 |
T |
|
| Q |
114 |
ctttttcttttcccattcgttcttcagattctaaattctttatacacatacatgaaaaatctatgataaacctc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31906535 |
ctttttcttttcccattcgttcttcagattctaaattctttatacacttacatgaaaaatctatgataaacctc |
31906608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 31906743 - 31906778
Alignment:
| Q |
327 |
cgtttccaattgggttatcaaatttcatacaaacaa |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
31906743 |
cgtttccaattgggttatcaaatttcatacaaacaa |
31906778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University