View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_high_15 (Length: 323)
Name: NF13331_high_15
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 327327 - 327644
Alignment:
| Q |
1 |
gttctatgttcatgcattatttcttatcattgtttttcatgtatgttatgctcctttgttatgttgtttaaagtgnnnnnnnncttatcattagatgtgt |
100 |
Q |
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| T |
327327 |
gttctatgttcatgcattatttcttatcattgtttttcatgtatgttatgctcctttgttatgttgtttaaagtgttttttt-cttatcattggatgtgt |
327425 |
T |
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| Q |
101 |
gttctttaataagttggtctctgatttctgatttactttgtttatatttcctgcatcttat---gctccttggttatgnnnnnnnaactgtattttgttg |
197 |
Q |
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| T |
327426 |
gttctttaataagttggtctctgattt-------actttatttatttttcctgcatcttattatgctccttggttatgtttttttaactgtattttgttg |
327518 |
T |
|
| Q |
198 |
gctttacaatattatattttcttaaaagtgtattacagtcttcttttaaattgtacttggttatgtttactccataaacttgtgttttgctagattcaag |
297 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
327519 |
gctttacaatattatattttcttaaaagtgtatttcagtcttcttttaaactgtacttggttatgtttactccctaaacttgtgttttgctagattcaag |
327618 |
T |
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| Q |
298 |
gttgcatataagtttcttaattgttt |
323 |
Q |
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||||||||||||||||||| |||||| |
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| T |
327619 |
gttgcatataagtttcttagttgttt |
327644 |
T |
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