View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_high_19 (Length: 239)
Name: NF13331_high_19
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 28415245 - 28415454
Alignment:
| Q |
13 |
aatattgcaccttatattaaaataagtgttaacattttcataatgattagttaatgtatatataacggaaactcaatgaccaattctaactaacttccct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28415245 |
aatattgcaccttatattaaaataagtgttaacattttcataatgactagttaatgtatatataacggaaactcaatgaccaattataactaacttccct |
28415344 |
T |
|
| Q |
113 |
ttcatgttaattacaacaacatcaacnnnnnnnnnnntcaacttctctttttatttttctgtctaattaaatgtgtttagcaaactcttaaggaagtctt |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28415345 |
ttcatgttaattacaacaacatcaac-aaaaaaaaaatcaacttctctttttatttttctgtctaattaaatgtgtttagcaaactcttaaggaagtctt |
28415443 |
T |
|
| Q |
213 |
accttaaacat |
223 |
Q |
| |
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||||||||||| |
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| T |
28415444 |
accttaaacat |
28415454 |
T |
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