View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_10 (Length: 453)
Name: NF13331_low_10
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 131 - 453
Target Start/End: Complemental strand, 40610783 - 40610463
Alignment:
| Q |
131 |
caataaggtatgtgcaattattgtatttcccactaccctttaatatatattccttcaatattttggttggactattttggcaaagtttctaatctttttc |
230 |
Q |
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| T |
40610783 |
caataaggtatgtgcaattattggatttcccactaccctttaatatatattccttcaatagtttggttggactattttggcaaagtttctaatctttttc |
40610684 |
T |
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| Q |
231 |
ttaatcaaactttacnnnnnnngactcaatagtacaagtttg-nnnnnnnnaacaaataaagaaaattttaaggtattgaacaagattacaagttcataa |
329 |
Q |
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| T |
40610683 |
ttaatcaaactttac-ttttttgact-aatagtacaagtttgtttttttttaacaaagaaagaaacttttaaggtattaaacaagattacaagttcataa |
40610586 |
T |
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| Q |
330 |
agtttgatccnnnnnnnnngttgttagcaccaagtt-aatagttgccaattcttctctttctctgttaatagctaccccttttgtttgtttgagttttgc |
428 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40610585 |
agtttgatcc--tttttttgttgtcagcaccaagttaaatagttgccaattcttctctttctctgttaatagctaccccttttgtttgtttgagttttgc |
40610488 |
T |
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| Q |
429 |
tgaaccaaatgtgtttgatctatgc |
453 |
Q |
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|||||||||| |||||||||||||| |
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| T |
40610487 |
tgaaccaaatttgtttgatctatgc |
40610463 |
T |
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