View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_12 (Length: 408)
Name: NF13331_low_12
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Complemental strand, 18556313 - 18555930
Alignment:
| Q |
8 |
cagcacagacacctcaatacaataggatatgaagcaaattccaaattcgatgaaatttgaaagaaaatattgcttaattttt-gtttaggagtggttttt |
106 |
Q |
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| T |
18556313 |
cagcacagacacctcaatacaataggatatgaagaaaattccaaattcgatgaaatttgaaagaaaatattgcttaattttttgtttaggagtggttttt |
18556214 |
T |
|
| Q |
107 |
cgtgtttgtctagggagaaaaatattgcttgtattttttcttatttttatcaatagctggtgtaggagtttctgtgtctgctacatgccatgttgaggtg |
206 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18556213 |
cgtgtttgtctagggagcaaaatattgcttgtattttttcttatttttatcaatagctggtgtaggggtttctgtgtctgctacatgccatgttgaggtg |
18556114 |
T |
|
| Q |
207 |
tgaattgtgatgtattagtgttacaacactcagcactataatttggttgtaatccctatcaccctcaaagtactactacctgttctttatggtgtgatta |
306 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18556113 |
tgaattgtgatgtactagtgttacaacactgagcactataatttgcttgtaatccctatcaccctcaaagtactactacctgttctttatggtgtgatta |
18556014 |
T |
|
| Q |
307 |
ttaatgaaatttctttcctctttaaagaaaaaacttcataatacatacgaattggcatttgttcgcaaaagtagtacatgatag |
390 |
Q |
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| T |
18556013 |
ttaatgaaattgctttcctctttaaagaaaaaacttcataatacatacgaattggcatttgttcgcaaaagtagaacatgatag |
18555930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 80 - 390
Target Start/End: Original strand, 29155194 - 29155503
Alignment:
| Q |
80 |
cttaatttttgtttaggagtggtttttcgtgtttgtctagggagaaaaatattgcttgtattttttcttatttttatcaatagctggtgtaggagtttct |
179 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||| ||| || ||||||||||||||||||||| |
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| T |
29155194 |
cttaatttttgcttaggagtggtttttagtgtttgtctagggagcaaaataatgcttgtattttt-cttatgtttgtccatagctggtgtaggagtttct |
29155292 |
T |
|
| Q |
180 |
gtgtctgctacatgccatgttgaggtgtgaattgtgatgtattagtgttacaacactcagcactataatttggttgtaatccctatcaccctcaaagtac |
279 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29155293 |
gtgtctgctacatgccatgttgagg-------tgtgatgtactagtgttacaacactcagcactataatttgcttgtaatccctatcaccctcaaagtac |
29155385 |
T |
|
| Q |
280 |
tactacctgttctttatggtgtg-attattaatgaaatttcttt------cctctttaaagaaaaaacttcataatacatacgaattggcatttgttcgc |
372 |
Q |
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||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29155386 |
tactacctgttctttatggtgtgtattattaataaaatttatttatttcctctctttaaagaaaaaacttcataatacataggaattggcatttgttcgc |
29155485 |
T |
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| Q |
373 |
aaaagtagtacatgatag |
390 |
Q |
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|||||||| ||||||||| |
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| T |
29155486 |
aaaagtagaacatgatag |
29155503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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