View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_13 (Length: 407)
Name: NF13331_low_13
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 69 - 402
Target Start/End: Original strand, 44566167 - 44566500
Alignment:
| Q |
69 |
ttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctacttt |
168 |
Q |
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| T |
44566167 |
ttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctacttt |
44566266 |
T |
|
| Q |
169 |
gtctatggtattaatcgttgcagtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttc |
268 |
Q |
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| T |
44566267 |
gtctatggtattaatcgttgcagtgtgctgatatattttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttc |
44566366 |
T |
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| Q |
269 |
agatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtga |
368 |
Q |
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| T |
44566367 |
agatatatgcagtaagtctaatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtga |
44566466 |
T |
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| Q |
369 |
tattattttctttacctaatttacaggtgccttt |
402 |
Q |
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| T |
44566467 |
tattattttctttacctaatttacaggtgccttt |
44566500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 36033061 - 36032682
Alignment:
| Q |
19 |
gttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattag |
118 |
Q |
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| T |
36033061 |
gttgtatccccaaccattgctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattag |
36032962 |
T |
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| Q |
119 |
tgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgttgcagtgtgctgatatattttattatatattg |
218 |
Q |
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|| |||||||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||| | | | ||||| | | ||| | ||||| |
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| T |
36032961 |
tggttattgttttttcccttgtaag-----tgaattcagactcccactttgtctatggtattgatcatcac---gcgctgacttcatccattttttattg |
36032870 |
T |
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| Q |
219 |
cttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtctaatgccacattattcttctgagttgctcttc |
318 |
Q |
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|||| ||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||| ||||||| | ||| |||| ||||| |||| |
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| T |
36032869 |
ctttctgcagtatcttcgtaagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgcaatgccataatatccttccgagttactctat |
36032770 |
T |
|
| Q |
319 |
agaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttacctaatttacaggtgccttt |
402 |
Q |
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|| || ||||||||||||||| |||||| ||||||||| ||||||||||| | |||||| |||||||||||| ||||| ||||| |
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| T |
36032769 |
agcagtgaaaataaatttctgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttacctaatttgcaggttccttt |
36032682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 44566136 - 44566169
Alignment:
| Q |
19 |
gttgtatcctcaaccattgctgcagttggacttt |
52 |
Q |
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| T |
44566136 |
gttgtatcctcaaccattgctgcagttggacttt |
44566169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 20121917 - 20122045
Alignment:
| Q |
18 |
agttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatatta |
117 |
Q |
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|||||||||| |||| ||||||||||||||||||||||| | || || || || || |||| || || ||||||||||| |||||||||||||||||| |
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| T |
20121917 |
agttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgagattggtgcagtacagatatta |
20122016 |
T |
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| Q |
118 |
gtgtttattgttttttgtcttgtaagttt |
146 |
Q |
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||| |||||||||| | ||||| |||||| |
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| T |
20122017 |
gtggttattgttttctctcttggaagttt |
20122045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
226 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
285 |
Q |
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| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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