View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_14 (Length: 391)
Name: NF13331_low_14
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 38072707 - 38072545
Alignment:
| Q |
20 |
ctcaagatattatttcatatgtgttgtacctttgttatatcattttccattcatcttagcgatttagagggggtttattgtggctgctttgaagctcttc |
119 |
Q |
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| T |
38072707 |
ctcaagatattatttcatatgtgttgtacctttgttatgtcattttccattcatcttagcgatttagagggggtttattgtggccgctttgaagctcttc |
38072608 |
T |
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| Q |
120 |
tggattttgatgctgttgaagttttggataaaagtttagcaattaaattttctctagatatga |
182 |
Q |
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| T |
38072607 |
tggattttgatgctgttgaagttttggataaaagtttagcgattaaattttctctagatatga |
38072545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 246 - 371
Target Start/End: Complemental strand, 38072536 - 38072403
Alignment:
| Q |
246 |
tcttacaagtaatcaaacctactgaagtgag--------tgactattggcatcatattttccgtattcattcctttttgtttactcatataattacatgt |
337 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38072536 |
tcttccaagtaatcaaacctactgaagtgaggtgcttggtgactattggcatcatattttccgtattcattcctttttgtttagtcatataattacatgt |
38072437 |
T |
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| Q |
338 |
accaatattgtgactcatcatttatctaaatttg |
371 |
Q |
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| T |
38072436 |
accaatattatgactcatcatttatctaaatttg |
38072403 |
T |
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