View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_16 (Length: 365)
Name: NF13331_low_16
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 26597883 - 26597532
Alignment:
| Q |
1 |
tttttaggaaacaaccgccatatttaactacttaattgttcctcaggtccttgatgtaggtcaggtttctattcaatcataagattatttaaaacttgaa |
100 |
Q |
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|||||| | |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26597883 |
tttttatggaacaactgccatatttaactacttaattgttcctcaggtccttgatctaggtcaggtttctattcaatcataagattatttaaaacttgaa |
26597784 |
T |
|
| Q |
101 |
atcatgaatcactaataaacttgaataagacacatgtaattacattgatgtaattttataaaccaaatatgggtggttaatcttcttctacccttcgaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26597783 |
atcatgaatcactaataaacttgaataagacacatgtaattacattgatataattttataaaccaaatatgggtagttaatcttcttctacccttcgaat |
26597684 |
T |
|
| Q |
201 |
tctctgttcttgccaataaaagcctctacagtacaacggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcatttcctcctcaa |
300 |
Q |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
26597683 |
cctctgttcttggcaataaaagcctctacagtacgatggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcgtttcctccttaa |
26597584 |
T |
|
| Q |
301 |
caacatgagcaggttcaatgtttttccttccagtgttctcacgcgcacacct |
352 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| | ||||||| |
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| T |
26597583 |
caacatgagcaggttcaatgtttttccttccattgttctcactctcacacct |
26597532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 26613020 - 26612892
Alignment:
| Q |
214 |
caataaaagcctctacagtacaacggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcatttcctcctcaacaacatgagcagg |
313 |
Q |
| |
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||||||||||||||||||||| ||| ||||||||||||||||||| |||||| ||||| |||| ||||| || | ||||| | || || |||||| |
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| T |
26613020 |
caataaaagcctctacagtacgacgaaactcctcgttgctcatctcatcctccggatatgaaattctcaccattttctcctcactagcagcaggagcagc |
26612921 |
T |
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| Q |
314 |
ttcaatgtttttccttccagtgttctcac |
342 |
Q |
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|||||| ||||||||||| ||||||||| |
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| T |
26612920 |
ttcaatctttttccttccgctgttctcac |
26612892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 329
Target Start/End: Complemental strand, 26605467 - 26605355
Alignment:
| Q |
214 |
caataaaagcctctacagtacaacggaactcctcgttgctcatcttatcctcgggatacaaaatcctcacaatcatttcctcctcaacaacatgagcagg |
313 |
Q |
| |
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|||||||||| |||||| | | ||| ||||| ||||||||||| | |||||| |||||| |||||||| | ||||||||||||| || | ||||| |
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| T |
26605467 |
caataaaagcttctacaatgcgacgaaactcatcgttgctcatttcatcctccggatacgaaatcctc---aacatttcctcctcagcaggagtagcagc |
26605371 |
T |
|
| Q |
314 |
ttcaatgtttttcctt |
329 |
Q |
| |
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||||||| |||||||| |
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| T |
26605370 |
ttcaatgattttcctt |
26605355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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