View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_19 (Length: 320)
Name: NF13331_low_19
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 5255703 - 5255988
Alignment:
| Q |
19 |
ggaaaataaacttttactctctcacctgagaatccaaacacgcgtatatattcgatgaagatgtttcaataataattcaaaactgagtactaatagaatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5255703 |
ggaaaataaacttttactctctcacctgagaatccaaacacgcgtatatattcgatgaagatgtttcaataataattcaaaactgagtactaatagaatt |
5255802 |
T |
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| Q |
119 |
agagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatccctataggattacataaacttagcatggataaaatctaaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5255803 |
agagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatccctataggattacataaacttagcatggataaaatctagaaa |
5255902 |
T |
|
| Q |
219 |
cttcagccgaaaatggaaaacaattgttgcctatacaaaggtatgcaggacccaaaccattgtcgtgccatttttcattgattcat |
304 |
Q |
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| T |
5255903 |
cttcagccaaaaatggaaaacaattgttgcctatacaaaggtatgcaggacccaaaccattgtcgtgccatttttcattgattcat |
5255988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 76 - 267
Target Start/End: Original strand, 5180429 - 5180619
Alignment:
| Q |
76 |
aagatgtttcaataataattcaaaactgagtactaatagaattagagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacat |
175 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||| | | |||||||||||||||||||||||||| |
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| T |
5180429 |
aagatgtttcaataataattcata-ctgagtactaatagagttagagtcacatgcaaaaaactagatatatcacggaaggtttgtaacttaaattaacat |
5180527 |
T |
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| Q |
176 |
ccctataggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgttgcctatacaaaggtatgcagg |
267 |
Q |
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| T |
5180528 |
ctctataggattacaaaaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgttgcctatacaaaggtatacagg |
5180619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 5282814 - 5283051
Alignment:
| Q |
19 |
ggaaaataaacttttactctctcacctgagaatccaaacacgcgtatatattcgatgaagatgtttcaataataattcaaaactgagtactaatagaatt |
118 |
Q |
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||||||| |||||| ||||| |||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
5282814 |
ggaaaatcaactttcactctatcacctgagaatccaaacacacaaatatattcgatgaagatgtttcgataataattcaaaactgagtactaacagaatt |
5282913 |
T |
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| Q |
119 |
agagtcacatgccaaaaactagatacaagatggaaggtttgtaacttaaattaacatccctataggattacataaacttagcatggataaaatctaaaaa |
218 |
Q |
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| T |
5282914 |
agagtcacatgccaaaaactagatataaaataggaggtttgtaacttcaattaacatctctagagtattacaaaaacttagcattgatacaatctagaaa |
5283013 |
T |
|
| Q |
219 |
cttcagccgaaaatggaaaacaa-ttgttgcctataca |
255 |
Q |
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|||||||| |||| | | |||| |||||||||||||| |
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| T |
5283014 |
cttcagccaaaaaagagatacaacttgttgcctataca |
5283051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 5334599 - 5334555
Alignment:
| Q |
200 |
catggataaaatctaaaaacttcagccgaaaatggaaaacaattg |
244 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
5334599 |
catggataaaatctagaaacttcagccaaaaatggaaaacaattg |
5334555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 5351878 - 5351832
Alignment:
| Q |
200 |
catggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
246 |
Q |
| |
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||||||||||||| | ||||| ||||| ||||||||||||||||||| |
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| T |
5351878 |
catggataaaatcaagaaactacagccaaaaatggaaaacaattgtt |
5351832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 5687616 - 5687572
Alignment:
| Q |
203 |
ggataaaatctaaaaacttcagccgaaaatggaaaacaattgttg |
247 |
Q |
| |
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|||||||||||| ||||| ||||| ||| |||||||||||||||| |
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| T |
5687616 |
ggataaaatctagaaactgcagccaaaattggaaaacaattgttg |
5687572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 47985112 - 47985177
Alignment:
| Q |
181 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
246 |
Q |
| |
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|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
47985112 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
47985177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 47994399 - 47994464
Alignment:
| Q |
181 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
246 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
47994399 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
47994464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 48003686 - 48003751
Alignment:
| Q |
181 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
246 |
Q |
| |
|
|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
48003686 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
48003751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 48012971 - 48013036
Alignment:
| Q |
181 |
taggattacataaacttagcatggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt |
246 |
Q |
| |
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|||||||||| ||| ||| |||| |||||||||| ||||||||||| ||| ||||||||||||||| |
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| T |
48012971 |
taggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaattggaaaacaattgtt |
48013036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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