View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13331_low_2 (Length: 640)
Name: NF13331_low_2
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 17581787 - 17582161
Alignment:
| Q |
17 |
agttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactatcaaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17581787 |
agttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacaaaattctatttcttggatttaagccatttaagcaagccactatcaaa |
17581886 |
T |
|
| Q |
117 |
tactgcaccgtaacttcttgtagcagaatcattgctaaccttcgtaacaaaaacaaatcactggtcatttgataaatatgccaagttagataattttatg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
17581887 |
tactgcaccgtaacttcttgtagcagaatcattgctaaccttcgtaacaaaaacaaatcactggt--------aaatatgctaagttagataattttatg |
17581978 |
T |
|
| Q |
217 |
atgactgatgagaggtctgtccttgcctgataattttattaggcaaggagttttcatcatcaaactgttacgattgactgtcggtatnnnnnnntgttta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
17581979 |
atgactgatgagaggtctgtccttgcctgataattttattaggcaaggagttttcatcatcaaactgttacgattgaccgtcgttataaaaaaatgttta |
17582078 |
T |
|
| Q |
317 |
cagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatggtaactgca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17582079 |
cagtgaaaggtatatctgaattaaatcaaaataaaaaatgatagttcaagagttttgctttctcatccaatatggtaactgca |
17582161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 428 - 631
Target Start/End: Original strand, 17582163 - 17582364
Alignment:
| Q |
428 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcacaacaacaaacagccatcca |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17582163 |
ccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcacaacaacaaacagccatcca |
17582262 |
T |
|
| Q |
528 |
agcaaattttgtcagataaatcaagcacatatatttgcacttcacagtgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaa |
627 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17582263 |
agcaaattttgtcagataaatcaagcac--atatttgcacttcacaatgtataatgttacaaatgatattcgagcacagggatatcaatcatgagaagaa |
17582360 |
T |
|
| Q |
628 |
taat |
631 |
Q |
| |
|
|||| |
|
|
| T |
17582361 |
taat |
17582364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 17572720 - 17572808
Alignment:
| Q |
24 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactat |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||| |
|
|
| T |
17572720 |
agatgttgggaacttgtttaagctgccaaaacttacatagagaacagaattctctttcttggagtttagccatttaagcaagtcactat |
17572808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 17619992 - 17619904
Alignment:
| Q |
24 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactat |
112 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||||| |||||| |
|
|
| T |
17619992 |
agatggtgggaacttgtttaagctgccaaaacttacatagataacagaattctctttcttggagtgcagccatttaagcaagtcactat |
17619904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 17572955 - 17573015
Alignment:
| Q |
109 |
ctatcaaatactgcaccgtaacttcttgtagcagaatcattgctaaccttcgtaacaaaaa |
169 |
Q |
| |
|
|||| ||||||||| || |||||||||||||| ||||||||| | |||||| ||||||||| |
|
|
| T |
17572955 |
ctattaaatactgcgccataacttcttgtagctgaatcattgatcaccttcataacaaaaa |
17573015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 313 - 631
Target Start/End: Complemental strand, 14745292 - 14744972
Alignment:
| Q |
313 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatccaatatg----gtaactgcagtctagtct |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||| |
|
|
| T |
14745292 |
tttacagtgaaaggtatatctgaattaaatcaaaataaaaaatgatggttcaagagttttgctttctcatgcaatatgcatggtaactgtagtctagtct |
14745193 |
T |
|
| Q |
409 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaagttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14745192 |
acctcacttgaaaagcaagccattttggaggttgcccctaagatagcacaacttctgcaccaagacactgataatattgtggaaacttcacttgaggcac |
14745093 |
T |
|
| Q |
509 |
aacaacaaacagccatccaagcaaattttgtcagataaatcaagcacatatatttgcacttcacagtgtataatgttacaaatgatattcgagcacaggg |
608 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14745092 |
aacaacaaacagccatccaaggaaattttgtcagataaatcaagcac--atatttgcacttcacaatgtataatgttacaaatgatattcgagcacaggg |
14744995 |
T |
|
| Q |
609 |
atatcaatcatgagaagaataat |
631 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14744994 |
atatcaatcatgagaagaataat |
14744972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 14756485 - 14756401
Alignment:
| Q |
17 |
agttccaagatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaag |
101 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14756485 |
agttccaagatgttgtaaacttgttctagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaag |
14756401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 14710317 - 14710398
Alignment:
| Q |
24 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaag |
105 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
14710317 |
agatgttgggaacttgtttaagctgccaaaacttagatagagaacagaattctctttcttagagttaagccatttaagcaag |
14710398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 12613510 - 12613421
Alignment:
| Q |
24 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaagcaagccactatc |
113 |
Q |
| |
|
||||| ||| |||||||| | ||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||| | |||||| |
|
|
| T |
12613510 |
agatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaagccatttaaacaaactactatc |
12613421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 53896354 - 53896391
Alignment:
| Q |
257 |
aggcaaggagttttcatcatcaaactgttacgattgac |
294 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |
|
|
| T |
53896354 |
aggcaaggagttttcaccaacaaactgttacgattgac |
53896391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 317 - 345
Target Start/End: Original strand, 53896417 - 53896445
Alignment:
| Q |
317 |
cagtgaaaggtatatctgaattaaatcaa |
345 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
53896417 |
cagtgaaaggtatatctgaattaaatcaa |
53896445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University