View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_3 (Length: 593)
Name: NF13331_low_3
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 314 - 570
Target Start/End: Complemental strand, 11749733 - 11749468
Alignment:
| Q |
314 |
cctccactcagcaatgtagcttctataacccaacaacaacatggtcacggtttcgaatataacaacatcatcgttatcagtgacgtcactgatgacgatg |
413 |
Q |
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| T |
11749733 |
cctccactcagcaatgtagcttctataacccaacaacaacatggccacggtttcgaatataacaacatcatcgttatcagtgacgtcactgatgacgatg |
11749634 |
T |
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| Q |
414 |
attagaggaaagaaatgatagagaatcaaaatccattgcctgattatatcgttagcaatgaaagtggaactgaaagtgatgatgatga---------tga |
504 |
Q |
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| T |
11749633 |
atcagaggaaagaaatgatagagaatcaaaatccattgcttggttatatcgttagcaatgaaagtggaactgaaagtgatgatgatgatgatgatgatga |
11749534 |
T |
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| Q |
505 |
taggaacagacagttttacaatggcgttgcaaagagatatgcatcattcattcacattcaacaaat |
570 |
Q |
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| T |
11749533 |
taggaacaaacagttttacgatggcgttgcaaagagatatgcatcattcattcccattcaacaaat |
11749468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 11749837 - 11749767
Alignment:
| Q |
198 |
ttcacgcgggaaagcaagaacagaagaaaatggacccaagaactgaaaattccaataccaaccaaaaacaa |
268 |
Q |
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| T |
11749837 |
ttcacgcgggaaagcaagaacagaagaaaatggacccaagaactgaaaattccaataccaaccaaaaacaa |
11749767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 47754354 - 47754405
Alignment:
| Q |
35 |
ttttaggcaccaaggaggaagcagcagaagcatatgatgtagcagcaataaa |
86 |
Q |
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| T |
47754354 |
ttttaggcactcaagaggaagcagcagaagcatatgatgtagcagcaataaa |
47754405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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