View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_4 (Length: 574)
Name: NF13331_low_4
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 236 - 544
Target Start/End: Original strand, 26335788 - 26336096
Alignment:
| Q |
236 |
gtgtctctacttttctagctttaatatgaaaagtgataggtttggaattaatggtgcttcctcttatatgttgtgcagcaaagtatttgggattgagatc |
335 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335788 |
gtgtctctacttttctagctttaatatgaaaaatgataggtttggaattaatggtgcttcctcttatatgttgtgcagcaaagtatttgggattgagatc |
26335887 |
T |
|
| Q |
336 |
accaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgataca |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26335888 |
accaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgataca |
26335987 |
T |
|
| Q |
436 |
ttttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctatactctctcagatatcaccaattctattgctt |
535 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26335988 |
ttttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccaaaaaaatgtctatactctctcagatatcaccaattctattgctt |
26336087 |
T |
|
| Q |
536 |
atgtctctg |
544 |
Q |
| |
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||||||||| |
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| T |
26336088 |
atgtctctg |
26336096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 26335570 - 26335734
Alignment:
| Q |
18 |
cataaaacctatatccggttcatggagagccccatatggcataacctttccccgaaagctgtccggaagattctccgacggcagagttttaactgacttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
26335570 |
cataaaacctatatccggttcatggagagccccatatggcataacctttccccgaaagccgtccggaagattctccgacggcatagttttaactgacttc |
26335669 |
T |
|
| Q |
118 |
cttggtatgtgaattcacccttccctctaatagcatcattatcaattagaacactacaaagtgca |
182 |
Q |
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| T |
26335670 |
cttggtatgtgaattcacccttccctctaatagcatcattatcaattggaacactacaaagtgca |
26335734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 290 - 544
Target Start/End: Original strand, 26328131 - 26328385
Alignment:
| Q |
290 |
tgcttcctcttatatgttgtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaa |
389 |
Q |
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||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||| |||||| |||||| ||| || | ||||||| | ||||||||||| |
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| T |
26328131 |
tgcttcctcttttatattgtgcagccaagtatttgggattgaaatcaccaatcactcacaatttatggaatactaatacagtgcctaagcatgatttgaa |
26328230 |
T |
|
| Q |
390 |
gtatgggatgaactttgcatatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatc |
489 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| | || |||| || |||||||| ||||||| ||||| ||||||| | | || |||| |
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| T |
26328231 |
gtatgggatgaactttgcctatggtggtacaggtgtatttgaaatatcttctacaggaccaaatgtgacaacacaaatcaattccttaatcaaactcatt |
26328330 |
T |
|
| Q |
490 |
cnnnnnnntgtctatactctctcagatatcaccaattctattgcttatgtctctg |
544 |
Q |
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| ||| || |||| ||||||||||||||| ||||| ||||||||||||| |
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| T |
26328331 |
caagaaaatgtatacactccctcagatatcaccaaatctatagcttatgtctctg |
26328385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 308 - 542
Target Start/End: Original strand, 26322849 - 26323077
Alignment:
| Q |
308 |
gtgcagcaaagtatttgggattgagatcaccaatcattcacaaattatggtataacaacatagtgcctgaacatgatttgaagtatgggatgaactttgc |
407 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||| ||||||||| || ||||| ||| || ||||| ||||||||||||||||||||||||| |
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| T |
26322849 |
gtgcagccaagtatttgagattgagatcaccaatccctcacaaattcagg------aacattgtgtctaaacattatttgaagtatgggatgaactttgc |
26322942 |
T |
|
| Q |
408 |
atatggtggtacaggtgtatttgatacattttcttcatgaccaaatatgacaacccaaattgattccttcaaccaagtcatccnnnnnnntgtctatact |
507 |
Q |
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||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |||| | |||||||||| |
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| T |
26322943 |
atatggtggcacaggtgtatttgatacatttacttcaggaccaaatatgacagcccaaatcgattccttcaaccaactcattcaagaaaatgtctatact |
26323042 |
T |
|
| Q |
508 |
ctctcagatatcaccaattctattgcttatgtctc |
542 |
Q |
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| |||||| ||| ||| |||||||||||||||| |
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| T |
26323043 |
ccttcagatctcagcaaagctattgcttatgtctc |
26323077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 26327685 - 26327747
Alignment:
| Q |
85 |
agattctccgacggcagagttttaactgacttccttggtatgtgaattcacccttccctctaa |
147 |
Q |
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| T |
26327685 |
agattctccgacggtagagttttaaccgacttccttggtatgtgaattcacccttccctctaa |
26327747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 26321094 - 26321184
Alignment:
| Q |
34 |
ggttcatggagagccccatatggcataacctttccccgaaagctgtccggaagattctccgacggcagagttttaactgacttccttggta |
124 |
Q |
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|||||||||| || || |||||||||||||||||| |||| | | ||||||||||| ||||| |||||||||||||||||| |||||| |
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| T |
26321094 |
ggttcatggaaagaaccttatggcataacctttcccggaaaacctgcaggaagattctcggacggtagagttttaactgacttcattggta |
26321184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 434
Target Start/End: Complemental strand, 42224184 - 42224133
Alignment:
| Q |
383 |
atttgaagtatgggatgaactttgcatatggtggtacaggtgtatttgatac |
434 |
Q |
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||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||| |
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| T |
42224184 |
atttgaaatatggaatgaactttgcatttggtggtactggtgtgtttgatac |
42224133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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