View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13331_low_6 (Length: 529)
Name: NF13331_low_6
Description: NF13331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13331_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 147 - 512
Target Start/End: Original strand, 22441235 - 22441615
Alignment:
| Q |
147 |
cataaatgaactacatctaattcaatcgaataaaaagtaaataaattacctcgcctatgctccacgcaagaaaagtgataaaaacgggaggtaattcctg |
246 |
Q |
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| T |
22441235 |
cataaatgaactacatctaattcaatcgaataaaaagtaaataaattacctcgcctatgctccacgcaagaaaagtgataaaaacgggaggtaactcctg |
22441334 |
T |
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| Q |
247 |
gacctagagaaatcacacaaccaaaaacacgagttagaggtgtgatcaaattacaccagaagagttacattaacagttaaactcattcaacaacataatc |
346 |
Q |
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| T |
22441335 |
gacctggagaaagcacacagccaaagacctgagttagagatgggatcgaattacatcggaggagttacactaacaattacactcattcagtaa---tatc |
22441431 |
T |
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| Q |
347 |
ctatcgtataaatacttctgattcgaaattacaatc-atatag--------atcatatatataaattttgacattaatctataatcatttcctatg---- |
433 |
Q |
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| T |
22441432 |
ctaccagataagtattttggattcaaaattactatcgttatcgtatgaataatcatatctataaattttgacattaatctataattatttcctatgtcat |
22441531 |
T |
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| Q |
434 |
-----tgcatcaagattaacgtcaatcagttcaataatctaaactaatggtaatatccatagaatgaaatagaacctcatgaat |
512 |
Q |
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| T |
22441532 |
cgagatgtgtcaagattaacgtcaatcaattcaataatctaaactaatggcaatatccatagaataaaatagaacctcatgaat |
22441615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 22441143 - 22441237
Alignment:
| Q |
17 |
aatatagtgtctgatgtagtttttcaattatccagtggttagagatatagagtacaaagccgtgttttcaattatgcaatgctatgctcaaccat |
111 |
Q |
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| T |
22441143 |
aatatagtgtctgatgtagtttttcaattatccagtggttagagatatagagtacaaagccgtgttttcaattatgcaatgctatgctcaaccat |
22441237 |
T |
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