View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13332_high_3 (Length: 204)
Name: NF13332_high_3
Description: NF13332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13332_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 3797858 - 3798029
Alignment:
| Q |
23 |
tgaacctcgagctccttaacccttagttcaaatcaattgagctatccaaccccctataatttatttattcaaattttcattttgaaaaatccagtagttc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3797858 |
tgaacctcgagctccttaacccttagttcaaatcaattgagctatccaaccccctataatttatttattcaaattttcattttgaaaaatccagtagttc |
3797957 |
T |
|
| Q |
123 |
tcgtatactta-ttgttttattattatgttgagacttttttagatttccaaccgccttagtatattcttgga |
193 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
3797958 |
tcgtatacttatttgttttattattatgttgagacttttttagattttcaaccgccttagtatcttgttgga |
3798029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 3805760 - 3805885
Alignment:
| Q |
52 |
aaatcaattgagctatccaaccccctataatttatttattcaaa-ttttcattttgaaaaa-tccagtagttctcgtatacttatt-gttttattattat |
148 |
Q |
| |
|
|||| |||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
3805760 |
aaatgaattgaactatccaaccccctataattc-tttattcaaaattttcattttgaaaaaatccagttattctcgtatacttatttgttttattattat |
3805858 |
T |
|
| Q |
149 |
gttgagactttt-ttagatttccaacc |
174 |
Q |
| |
|
|||||||||||| |||||| ||||||| |
|
|
| T |
3805859 |
gttgagacttttgttagatatccaacc |
3805885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 28797110 - 28797069
Alignment:
| Q |
34 |
ctccttaacccttagttcaaatcaattgagctatccaacccc |
75 |
Q |
| |
|
|||||||||| |||||||||| |||| ||||||||||||||| |
|
|
| T |
28797110 |
ctccttaaccattagttcaaaccaatcgagctatccaacccc |
28797069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 6296900 - 6296848
Alignment:
| Q |
24 |
gaacctcgagctccttaacccttagttcaaatcaattgagctatccaaccccc |
76 |
Q |
| |
|
||||||| | ||||||| ||||||| ||||| ||||||||||| ||||||||| |
|
|
| T |
6296900 |
gaacctccaactccttatcccttagctcaaaccaattgagctacccaaccccc |
6296848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University