View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13332_low_1 (Length: 546)
Name: NF13332_low_1
Description: NF13332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13332_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 5 - 509
Target Start/End: Original strand, 28645439 - 28645943
Alignment:
| Q |
5 |
acatgaatagttttgaaaggctacatggacgttttagccagagttaacccaaaatttgatggaaagggcaaacttatgttaacatcagtaacgtaagggg |
104 |
Q |
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| T |
28645439 |
acatgaatagttttgaaaggctacatggacgttttagccagagttaacccaaaatttgatggaaagggcaaacttatgctaacatcagtaacgtaaggga |
28645538 |
T |
|
| Q |
105 |
ccaacttaaaacctaaaataaatgtaagagacaaaacatgccgttaaagcgtctgccattgtcatgtctagtgtannnnnnnnnaaacataactagtcta |
204 |
Q |
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| T |
28645539 |
ccaacttaaaacctaaaataaatgtaagagacaaaacatgccgttaaagcgtctgccattgtcatgtctagtgtattttttttaaaacataactagtcta |
28645638 |
T |
|
| Q |
205 |
ttctattcaatccaattccatttcaccccatacaacccattaatccaaaagtacaactaatagagatgctccgaacaagtccataaagtctagctcaact |
304 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28645639 |
ttctattcaatccaattccatttcaccccatagaacccatcaatccaaaaatacaactaatagagatactccgaacaagtccataaagtctagctcaact |
28645738 |
T |
|
| Q |
305 |
gacaatgatattgttaggttagacaccttcactcataatcgaatccatgacctctcaattgtgtgtgagttttacatggtgtaccatttcatccaaaaac |
404 |
Q |
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| T |
28645739 |
gacgatgatattgttaggttagacaccttcactcataatcgaatccatgacctctcaattgtgtgtgagttttacatggtgtaccatttcatccaaaaac |
28645838 |
T |
|
| Q |
405 |
caaataaaaagtatacactctaaacaaaatttcccattgttttttatcatgaagtagaattgttgatatttatcaaaaccacccaacaattggaacaaga |
504 |
Q |
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| T |
28645839 |
caaataaaaagtatacactctaaacaaaatttcccattgttttttatcatgaagtagaattgttgatatttatcaaaaccacccaacaattggaacaaga |
28645938 |
T |
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| Q |
505 |
cccat |
509 |
Q |
| |
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||||| |
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| T |
28645939 |
cccat |
28645943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 30390182 - 30390220
Alignment:
| Q |
105 |
ccaacttaaaacctaaaataaatgtaagagacaaaacat |
143 |
Q |
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| T |
30390182 |
ccaacttaaaacctaaaataaatgtaagagacaaaacat |
30390220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 40744071 - 40744146
Alignment:
| Q |
27 |
acatggacgttttagccagagttaacccaaaatttgatggaaagggcaaacttatgttaacatcagtaacgtaagg |
102 |
Q |
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| T |
40744071 |
acatggacgttttcgacagagttacctcaaaatatgacggaaaggacgaacttatgttgacatcaataacgtaagg |
40744146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 25853143 - 25853199
Alignment:
| Q |
89 |
tcagtaacgtaaggggccaacttaaaacctaaaataaatgtaagagacaaaacatgc |
145 |
Q |
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|||||||||||| | ||||||| |||||||||||||||||| ||||||||||||| |
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| T |
25853143 |
tcagtaacgtaacgaaccaacttgaaacctaaaataaatgtacaagacaaaacatgc |
25853199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 21446043 - 21445992
Alignment:
| Q |
94 |
aacgtaaggggccaacttaaaacctaaaataaatgtaagagacaaaacatgc |
145 |
Q |
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| T |
21446043 |
aacgtaagggaccaacttaaaatctaaaataaatataagggaccaaacatgc |
21445992 |
T |
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