View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13332_low_2 (Length: 491)
Name: NF13332_low_2
Description: NF13332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13332_low_2 |
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| [»] scaffold0489 (1 HSPs) |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0489 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: scaffold0489
Description:
Target: scaffold0489; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Original strand, 9415 - 9882
Alignment:
| Q |
19 |
aaaagtactcataatgtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9415 |
aaaagtactcataatgtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattag |
9514 |
T |
|
| Q |
119 |
aggtcttcacacactaaaacagactcaacaacgaacctgacattcagaactagaggttgatcgagttgagctagaatttctaaaagaaatctgaagtagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9515 |
aggtcttcacacactaaaacagactcaacaacgaacctgacattcagaactagaggttgattgagttgagctagaatttctaaaagaaatctgaagtagt |
9614 |
T |
|
| Q |
219 |
tccctccaatgacatgtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtt |
318 |
Q |
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| T |
9615 |
tccctccaatgacatgtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtt |
9714 |
T |
|
| Q |
319 |
tccatgtttgctttaatattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaa |
418 |
Q |
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| T |
9715 |
tccatgtttgctttaatattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaa |
9814 |
T |
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| Q |
419 |
atcgagaagcataatcagatttggatgagttaaggccatgatgatcttgtgttgtgctctgtgctcct |
486 |
Q |
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| T |
9815 |
atcgagaagcataatcagatttggatgagttaaggccatgatgatcttgtgttgtgctttgtgctcct |
9882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 486
Target Start/End: Complemental strand, 11613 - 11146
Alignment:
| Q |
19 |
aaaagtactcataatgtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattag |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11613 |
aaaagtactcataatgtacacatctttcttgcttgtaagtgtaattaagaggatgttatgatcgattccatttgctagagttctctagtctttaaattag |
11514 |
T |
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| Q |
119 |
aggtcttcacacactaaaacagactcaacaacgaacctgacattcagaactagaggttgatcgagttgagctagaatttctaaaagaaatctgaagtagt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11513 |
aggtcttcacacactaaaacagactcaacaacgaacctgacattcagaactagaggttgattgagttgagctagaatttctaaaagaaatctgaagtagt |
11414 |
T |
|
| Q |
219 |
tccctccaatgacatgtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11413 |
tccctccaatgacatgtttataagctcttcatggcactcatgacttgctcccccatcttcaaaaagccatttttcaagcaaagtaagaggaacatgcgtt |
11314 |
T |
|
| Q |
319 |
tccatgtttgctttaatattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11313 |
tccatgtttgctttaatattaatcctttcctcttggtggaagaagagaccctcttttgtgttcaagttgaagctgttgtttccttcatgagatgacctaa |
11214 |
T |
|
| Q |
419 |
atcgagaagcataatcagatttggatgagttaaggccatgatgatcttgtgttgtgctctgtgctcct |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11213 |
atcgagaagcataatcagatttggatgagttaaggccatgatgatcttgtgttgtgctttgtgctcct |
11146 |
T |
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