View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13332_low_3 (Length: 287)
Name: NF13332_low_3
Description: NF13332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13332_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 43564376 - 43564617
Alignment:
| Q |
19 |
aacaaaccttggttcaacgccgccttttgaaaaaccctcaagaccatgaaaaacaccaataggattaacagttaaatagaaagcatcccaagtgcaccaa |
118 |
Q |
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||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564376 |
aacaaacctcggttcaactccgcctttagaaaaaccctcaagaccatgaaaaacaccaataggattaacagttaaatagaaagcatcccaagtgcaccaa |
43564475 |
T |
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| Q |
119 |
ccaaatttatcaactaaatttggtagtgttttctcttccaataacctaaaagtgttgagatgaacccttataacactataagcctctttcatcaaatcat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43564476 |
ccaaatttatcaactaaatttggtagtgttttctcttccaatagcctaaaagtgttgagatgaacccttataacactataagcttctttcatcaaatcat |
43564575 |
T |
|
| Q |
219 |
aaggattttcagaaaaatgaacataagcaatagcattgaaac |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43564576 |
aaggattttcagaaaaatgaacataagcaatagcattgaaac |
43564617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 36432331 - 36432590
Alignment:
| Q |
19 |
aacaaaccttggttcaacgccgccttttgaaaaaccctcaagaccatgaaaaacaccaataggattaacagttaaatagaaagcatcccaagtgcaccaa |
118 |
Q |
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|||||| ||||| ||||||||||||||||| ||| | || |||||||||||||||||||||||||| ||||| ||||| ||||||||||| || |||||| |
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| T |
36432331 |
aacaaatcttggctcaacgccgccttttgagaaatcatcgagaccatgaaaaacaccaataggattcacagtcaaataaaaagcatcccatgtacaccaa |
36432430 |
T |
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| Q |
119 |
ccaaatttatcaactaaatttggtagtgttttctcttccaataacctaaaagtgttgagatgaacccttataacactataagcctctttcatcaaatcat |
218 |
Q |
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|||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||||||| | | |||||||||| |||||||||||||||| |
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| T |
36432431 |
ccaaatttatcaaccaaatttggaagtgttttctcttccagtagcctaaaagtgttgagatgaaccctcaaagcactataagcttctttcatcaaatcat |
36432530 |
T |
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| Q |
219 |
aaggattttcagaaaaatgaacataagcaatagcattgaaacatgattctttcacctttg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
36432531 |
aaggattttcagaaaaatgaacataagcaatagcattgaaactcaatgctttcacctttg |
36432590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 43974226 - 43973972
Alignment:
| Q |
19 |
aacaaaccttggttcaacgccgccttttgaaaaaccc-tcaagaccatgaaaaacaccaataggattaacagttaaatagaaagcatcccaagtgcacca |
117 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||||| || ||||| |
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| T |
43974226 |
aacaaacctaggttcaacaccgc-ttttcaaaaactcatcaagaccatgaaaaacaccaataggaccaacacttaaatagaaagcatcccatgtacacca |
43974128 |
T |
|
| Q |
118 |
accaaatttatcaactaaatttggtagtgttttctcttccaataacctaaaagtgttgagatgaacccttataacactataagcctctttcatcaaatca |
217 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||| |||||||||| || ||||||||| | |
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| T |
43974127 |
accaaatttatcaaccaaatttggaagtgttttctcttccaaaagcctaaaagtattgagatgaaccctaatagcactataagcttcattcatcaaagta |
43974028 |
T |
|
| Q |
218 |
taaggattttcagaaaaatgaacataagcaatagcattgaaacatgattctttcac |
273 |
Q |
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|||||||||||| | ||||||||||||||| |||| ||||| ||| ||||||| |
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| T |
43974027 |
taaggattttcactcacatgaacataagcaatcgcatcgaaactcgatgctttcac |
43973972 |
T |
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