View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13332_low_6 (Length: 238)
Name: NF13332_low_6
Description: NF13332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13332_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 16907757 - 16907981
Alignment:
| Q |
18 |
agaaacatatatgactaacaaaataatattattgatttaacctctagacaaaggaattctcaatcagaatttcatacaaatacaatgattacatagacat |
117 |
Q |
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| T |
16907757 |
agaagcatatatgactaacaaaataatattattgatctaacctctagacaaaggatttctcaatcagaatttcatacaaatacaatgattacatagacat |
16907856 |
T |
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| Q |
118 |
tgttacaaagcaaaaacagaacagaag--acacttgaaaatgaccactaaattaacttcctaataaccacttaattaacttcccaaaacaaaa--acaca |
213 |
Q |
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| T |
16907857 |
tgttacaaagaaaaaacagaacagaagacacacttgaaaatgaccacttaattaacttcctaataaccacttaattaacttcccaaaacaaaaacacaca |
16907956 |
T |
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| Q |
214 |
cataattaactggtataatataaat |
238 |
Q |
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| T |
16907957 |
cataattaactggtataatataaat |
16907981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 14870607 - 14870505
Alignment:
| Q |
28 |
atgactaacaaaataatattattgatttaacctctagacaaaggaatt---ctcaatcagaatttcatacaaatacaatgattacatagacattgttaca |
124 |
Q |
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|||| |||||| ||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
14870607 |
atgaataacaacgtaataatattgatctaacctctagacaaaggcattattctcaatcagaatttcatacaaatacaatgtttgcatagacattgttaca |
14870508 |
T |
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| Q |
125 |
aag |
127 |
Q |
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||| |
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| T |
14870507 |
aag |
14870505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 14870479 - 14870447
Alignment:
| Q |
181 |
accacttaattaacttcccaaaacaaaaacaca |
213 |
Q |
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| T |
14870479 |
accacttaattaacttcccaaaacataaacaca |
14870447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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