View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13334_low_1 (Length: 483)
Name: NF13334_low_1
Description: NF13334
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13334_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 32223948 - 32223591
Alignment:
| Q |
19 |
ggttgaggtctaccttcctttgcacaaatcccccatctgtcagattttgcagaagctttaaatgtttggtcgattatgtcactcgacctttcactcattc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
32223948 |
ggttgaggtctaccttcctttgcacaaatcccccatctgtcagattttgcagaagctttaaatgtttg-tcgattatgtcacttgacctttcactcattc |
32223850 |
T |
|
| Q |
119 |
acatttcatgtgactctctaaggatacttgctagtcgtcaatgtcattattttatgannnnnnnnactctttaatcgctgctacgacataatcaaatcgt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32223849 |
acatttcatgtgactctctaaggatacttgctagtcgtcaatgtcattattttatgattttttt-actctttaatcgctgctacgacataatcaaatcgt |
32223751 |
T |
|
| Q |
219 |
cgtgttagtgtgcacatgattttttcgatgacttatatttgtgctatatcatcactgttattcttgatatcactgaccaacctatccatccattttgaca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223750 |
cgtgttagtgtgcacatgattttttcgatgacttatatttgtgctatatcatcactgttattcttgatatcactgaccaacctatccatccattttgaca |
32223651 |
T |
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| Q |
319 |
aacattcattttcattaatgaatacttacatctttgcactgttcaatcaactcaaactgt |
378 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32223650 |
aacattcattttcattaatgattacttacatctttgcactgttcaatcaactcaaactgt |
32223591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 32241227 - 32240868
Alignment:
| Q |
19 |
ggttgaggtctaccttcctttgcacaaatcccccatctgtcagattttgcagaagctttaaatgtttggtcgattatgtcactcgacctttcactcattc |
118 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32241227 |
ggttgaggtctaccatcctttgcacaaatccctcatctgtcagattttgaaggagctttaaatgtttggtcgattatgtcactcgacctttcactcattc |
32241128 |
T |
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| Q |
119 |
acatttcatgtgactctctaaggatacttgctagtcgt-caatgtcattattttatgannnnnnnnactctttaatcgctgctacgacataatcaaatcg |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| || |||||||||||||||||||| | ||||||||||| |
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| T |
32241127 |
acatttcatgtgactctctaaggatacttgctattcgttcaatgtcgttattttaagattatttt-actctttaatcgctgctacggcgtaatcaaatcg |
32241029 |
T |
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| Q |
218 |
tcgtgttagtgtgcacatgattttttcgatgacttatatttgtgctatatcatcactgttattcttgatatcactgaccaacctatccatccattttgac |
317 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
32241028 |
tcgtgtaagtgtgcacatgattttttcgatgacttatttttttgctatatcatcactgttattcttgatatcagtgaccaacttatccacccattttgac |
32240929 |
T |
|
| Q |
318 |
aaacattcattttcattaatgaatacttacatctttgcactgttcaatcaactcaaactgt |
378 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32240928 |
aaacattcattttcattaatgattacttacatctttgcactgttcaatcaactcaaactgt |
32240868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 375 - 474
Target Start/End: Complemental strand, 32223507 - 32223408
Alignment:
| Q |
375 |
ctgtaagattaggcagctccacgtatactgacatatgaaaagaaaagtttttaattgcgttagatatctttttctacatgtttttattgatcaacctatg |
474 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32223507 |
ctgtaagattaggcagctccacgtatactgacatattaaaagcaaagtttttaattgcgttaaatatctttttctacatgtttttattgatcaacctatg |
32223408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 32240783 - 32240686
Alignment:
| Q |
375 |
ctgtaagattaggcagctccacgtatactgacatatgaaaagaaaagtttttaattgcgttagatatc-tttttctacatgtttttattgatcaacct |
471 |
Q |
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||||||||| |||||||||| | ||||||||||||| ||||| |||||||||||||| | | ||||| ||||||||| ||||||||||||||||||| |
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| T |
32240783 |
ctgtaagatcaggcagctcctcatatactgacatattaaaagcgaagtttttaattgcataaaatatcttttttctacctgtttttattgatcaacct |
32240686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 37 - 131
Target Start/End: Complemental strand, 16257730 - 16257635
Alignment:
| Q |
37 |
tttgcacaaatcccccatctgtcagatttt-gcagaagctttaaatgtttggtcgattatgtcactcgacctttcactcattcacatttcatgtga |
131 |
Q |
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|||||| |||||| ||| ||||||||||| |||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16257730 |
tttgcagaaatccgtcatttgtcagatttttgcaggagattaaaatgtttggtcgattatgtcactcgacctttcagtcattcacatttcatgtga |
16257635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 8675805 - 8675913
Alignment:
| Q |
25 |
ggtctaccttcctttgcacaaatcccccatctgtcagattttgcagaagctttaaatgtttggtcgattatgtcactcgacctttcactcattcacattt |
124 |
Q |
| |
|
||||||||||||||| |||||||||| || |||||||||| | | |||| |||||||||| |||||| ||||||| ||||||||||||||| |||||| |
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| T |
8675805 |
ggtctaccttcctttacacaaatcccttatttgtcagattt-gttggagctgtaaatgtttgttcgattgtgtcacttgacctttcactcattaacattt |
8675903 |
T |
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| Q |
125 |
catgtgactc |
134 |
Q |
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|||| ||||| |
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| T |
8675904 |
catgcgactc |
8675913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 134
Target Start/End: Complemental strand, 1347247 - 1347138
Alignment:
| Q |
25 |
ggtctaccttcctttgcacaaatcccccatctgtcagattttgcagaagctttaaatgtttggtcgattatgtcactcga-cctttcactcattcacatt |
123 |
Q |
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|||||||||||||||||||||||||| || |||||| ||||| | ||||| || || ||| | |||| ||||||| || |||||| |||||| |||| |
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| T |
1347247 |
ggtctaccttcctttgcacaaatccctaatttgtcag-ttttgttggagcttgaagtgcttgattgattgtgtcacttgaccctttctttcattcgcatt |
1347149 |
T |
|
| Q |
124 |
tcatgtgactc |
134 |
Q |
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||||||||||| |
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| T |
1347148 |
tcatgtgactc |
1347138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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