View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_high_4 (Length: 415)
Name: NF13335_high_4
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 35970756 - 35971144
Alignment:
| Q |
17 |
agctccatagataggatctttcatttgtgttcacatacatgaacaatgtttaagaagggtaaaaaatgataatccgttttgattctaacaatggaatact |
116 |
Q |
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| T |
35970756 |
agctccatagataggatctttcatttgtgttcacatacatgaacaatgtttaagaagggtaaaaaatgataatccgttctgattctaacaatggaatact |
35970855 |
T |
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| Q |
117 |
taatttaatttcatcggaaattatccaaacaatggtatatgagatttattctcctctccatcctactttgctcattttaaattacgaggttaaaggtcgt |
216 |
Q |
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| T |
35970856 |
ttatttaatttcatcggaaattatccaaacaatggtatatgagatttattctcctctccatccaactttgctcattttaaattacgaggttaaaggtcgt |
35970955 |
T |
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| Q |
217 |
atactgaaacaattttacacagaaaaacattattttttgacaaatacactaacaaccaattaaaatacacaaatttgctacaatatattatattttctag |
316 |
Q |
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| T |
35970956 |
atactgaaacaattttacacagaaaaacattattttttgacaaatacactaacaaccaattaaaatacacaaatttgctacaatatattatattttctag |
35971055 |
T |
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| Q |
317 |
ataattcaactaaattaaaattaagaagaagnnnnnnncaacagattgtgatatgttactcattctctcacatctcgactacaaacgcc |
405 |
Q |
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| T |
35971056 |
ataattcaactaaatttaaattaagaagaagaaaaaaacaacagattgtgatatgttactcattctctcacatctcgactacaaacgcc |
35971144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 344
Target Start/End: Original strand, 35974963 - 35975287
Alignment:
| Q |
27 |
ataggatctttcatttgtgttcacatacatgaacaatgtttaagaagggtaaaaaatgataatccgttttgattctaacaatggaatacttaatttaatt |
126 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||| |
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| T |
35974963 |
ataggatctttcatttgtgtttacatacatgaacaatgtttaagaagggtaaaaaatgataatccattctgattctaacaatggaatactttatttaatt |
35975062 |
T |
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| Q |
127 |
tcatcggaaattatccaaacaatggtatatgagatttattctcctctccatcctactttgctcattttaaattacgaggttaaaggtcgtatactgaaac |
226 |
Q |
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|||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35975063 |
tcatcggaaattctccaaacaatggtatataagatttcttctcctctccatcctactttgctcattttaaattatgaggttaaaggtcgtatactgaaac |
35975162 |
T |
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| Q |
227 |
aattttacacagaaaaacattattttt------tgacaaatacactaacaaccaattaaaatacacaaatttgctacaatatatt-atattttctagata |
319 |
Q |
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| T |
35975163 |
aattttacactaacaaacaatttttttttttgctgacaaatacactaacaaacaattaaaatacacaaatttgccacaatatattaatattttctagata |
35975262 |
T |
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| Q |
320 |
attcaactaaattaaaattaagaag |
344 |
Q |
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| T |
35975263 |
attcaactaaatttaaattaagaag |
35975287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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