View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13335_low_1 (Length: 652)

Name: NF13335_low_1
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13335_low_1
NF13335_low_1
[»] chr6 (28 HSPs)
chr6 (32-213)||(26964088-26964268)
chr6 (234-366)||(31290833-31290965)
chr6 (71-213)||(26650847-26650989)
chr6 (71-213)||(26756815-26756957)
chr6 (576-652)||(27525642-27525718)
chr6 (291-435)||(26629201-26629346)
chr6 (291-435)||(26735177-26735322)
chr6 (256-362)||(26963980-26964086)
chr6 (19-142)||(26965931-26966054)
chr6 (256-362)||(26650739-26650845)
chr6 (256-362)||(26756707-26756813)
chr6 (233-302)||(27652757-27652826)
chr6 (199-255)||(27422832-27422888)
chr6 (101-148)||(27652664-27652711)
chr6 (18-141)||(27422712-27422831)
chr6 (18-148)||(26629415-26629547)
chr6 (95-148)||(26640358-26640411)
chr6 (18-148)||(26735391-26735523)
chr6 (95-148)||(26746324-26746377)
chr6 (233-292)||(26640274-26640331)
chr6 (233-292)||(26746240-26746297)
chr6 (182-221)||(26629362-26629401)
chr6 (182-221)||(26735338-26735377)
chr6 (233-275)||(27506761-27506803)
chr6 (310-354)||(26964723-26964767)
chr6 (108-191)||(28783611-28783694)
chr6 (131-228)||(27606872-27606969)
chr6 (375-435)||(27422971-27423031)
[»] scaffold0713 (1 HSPs)
scaffold0713 (576-652)||(3511-3587)
[»] chr1 (3 HSPs)
chr1 (576-652)||(14648681-14648757)
chr1 (576-652)||(14658471-14658547)
chr1 (592-652)||(17654897-17654956)
[»] chr5 (1 HSPs)
chr5 (576-652)||(27199802-27199878)
[»] scaffold0003 (3 HSPs)
scaffold0003 (199-255)||(64475-64531)
scaffold0003 (18-141)||(64532-64651)
scaffold0003 (375-435)||(64332-64392)
[»] chr4 (3 HSPs)
chr4 (232-283)||(18719305-18719354)
chr4 (233-283)||(18674703-18674751)
chr4 (236-283)||(18692787-18692832)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 26964268 - 26964088
Alignment:
Q  32 caaaaaattctaatatgttacggttaaaac-gagaaagttaaattaaattcatcttaagagatttataagtcatatgaataaaggaaatgttaattcatg 130  Q
    ||||||||||||| ||||| |||| ||||  |||||  | |||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||| |    
T  26964268 caaaaaattctaacatgtttcggtcaaaaatgagaa--taaaatgaaattcattttaaaagatttataagtcatatgaataaaggaagtgttaattcacg 26964171  T
Q  131 agatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 213  Q
    |||||||||||||||||||  | |||||  ||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  26964170 agatacattaaagagaaacggattaccagattgtaagacttcacaaagaaatggaagaaaaaatataaggagtagcagataaa 26964088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 31290965 - 31290833
Alignment:
Q  234 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttatacc 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||| |||||| ||| | |||||||||||    
T  31290965 tggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttccatttgccaaatcaaaacaaaatttgataggaaaaaagcttctttatacc 31290866  T
Q  334 ataaagttcatacatataaatttttccacaaca 366  Q
    ||  ||||||||||||||||| || ||||||||    
T  31290865 atctagttcatacatataaatgttcccacaaca 31290833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 26650989 - 26650847
Alignment:
Q  71 aaattaaattcatcttaagagatttataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagact 170  Q
    |||| |||||||| |||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  26650989 aaatgaaattcattttaaaatatttttaagtcatatgaataaaggaaatgttaattcacgagatacattaaagagaaacggagtaccagtttgtaagact 26650890  T
Q  171 tcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 213  Q
    ||| || || | ||||||||||||||| ||||||| |||||||    
T  26650889 tcacaaagataaggaagaaaaaatataaggagtagaagataaa 26650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 26756957 - 26756815
Alignment:
Q  71 aaattaaattcatcttaagagatttataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagact 170  Q
    |||| |||||||| |||| | |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||    
T  26756957 aaatgaaattcattttaaaatatttttaagtcatatgaataaaggaaatgttaattcacgagatacattaaagagaaacggagtaccagtttgtaagact 26756858  T
Q  171 tcaaaatgaaatggaagaaaaaatatatggagtagcagataaa 213  Q
    ||| || || | ||||||||||||||| ||||||| |||||||    
T  26756857 tcacaaagataaggaagaaaaaatataaggagtagaagataaa 26756815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 27525642 - 27525718
Alignment:
Q  576 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttc 652  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27525642 gatgtacacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttc 27525718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 26629346 - 26629201
Alignment:
Q  291 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 389  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26629346 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26629247  T
Q  390 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 435  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26629246 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26629201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 291 - 435
Target Start/End: Complemental strand, 26735322 - 26735177
Alignment:
Q  291 caaatcgaaacataatttaataggagaaaggt-ttctttataccataaagttcatacatataaatttttccacaacaaatacttcttttgcaatttgtaa 389  Q
    |||||| ||| | ||||| |||||| |||||  ||||||||||||| |||||||||||||||||| |||||| |||| ||| || ||||||||||| |||    
T  26735322 caaatcaaaagaaaatttgataggaaaaaggccttctttataccatcaagttcatacatataaatgtttccaaaacatatattttttttgcaatttttaa 26735223  T
Q  390 ttctctgaagtatctatttgactgtgatagaagatgaagtttgtat 435  Q
    |||| |||| ||||||||| | ||||||| |||||||| |||||||    
T  26735222 ttctttgaattatctatttcagtgtgatataagatgaaatttgtat 26735177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 26964086 - 26963980
Alignment:
Q  256 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 355  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| |||||| ||||| || | |||||||| |||||||||||||||||      
T  26964086 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgataggaaaaaggcttttgtataccatcaagttcatacatataaacg 26963987  T
Q  356 tttccac 362  Q
    |||||||    
T  26963986 tttccac 26963980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 26966054 - 26965931
Alignment:
Q  19 attatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaataaaggaaa 118  Q
    |||||||||||| ||||||||  ||| |||||||| | |||| |||||| | |||  ||| |||| ||||   || ||||||||||||| ||||||||||    
T  26966054 attatgcagaaaacaaaaaatcataacatgttacgctcaaaatgagaaaataaaaccaaaatcattttaaagcatgtataagtcatatgtataaaggaaa 26965955  T
Q  119 tgttaattcatgagatacattaaa 142  Q
    | ||||||||||||||||||||||    
T  26965954 tattaattcatgagatacattaaa 26965931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 26650845 - 26650739
Alignment:
Q  256 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 355  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26650845 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26650746  T
Q  356 tttccac 362  Q
    |||||||    
T  26650745 tttccac 26650739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 256 - 362
Target Start/End: Complemental strand, 26756813 - 26756707
Alignment:
Q  256 tgagttatgaaacgaaattctccacttcgttttgccaaatcgaaacataatttaataggagaaaggtttctttataccataaagttcatacatataaatt 355  Q
    |||||||||||| |||||||||||||||  ||||| || |||||||| ||||| || ||| ||||| |||| |||||||| || ||||||||||||||      
T  26756813 tgagttatgaaaggaaattctccacttccatttgcaaattcgaaacaaaatttgattggaaaaaggcttctgtataccatcaatttcatacatataaacg 26756714  T
Q  356 tttccac 362  Q
    |||||||    
T  26756713 tttccac 26756707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 27652757 - 27652826
Alignment:
Q  233 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgccaaatcgaaaca 302  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  27652757 ttggaagcataaaaccaaaattttgagttatgaaacgaaattctccacttccatttgccagatcaaaaca 27652826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 27422832 - 27422888
Alignment:
Q  199 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 255  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  27422832 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 27422888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 27652664 - 27652711
Alignment:
Q  101 tcatatgaataaaggaaatgttaattcatgagatacattaaagagaaa 148  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  27652664 tcatatgaataaagtaaatattaattcatgagatacattaaagagaaa 27652711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 27422712 - 27422831
Alignment:
Q  18 cattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaataaaggaa 117  Q
    ||||||||||||| ||||||||||| | |||||||||| |||| |||||| | |||| |||||||  |||| | ||| |||| |||||||    ||||||    
T  27422712 cattatgcagaaaacaaaaaattctgacatgttacggtcaaaatgagaaaataaaatgaaattcagtttaaaatattaataaatcatatg----aaggaa 27422807  T
Q  118 atgttaattcatgagatacattaa 141  Q
    || | ||||| |||||||||||||    
T  27422808 atatgaattcttgagatacattaa 27422831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 26629547 - 26629415
Alignment:
Q  18 cattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaa--ttaaattcatcttaagagatttataagtcatatgaataaagg 115  Q
    ||||||| ||||| ||||||||||||  |||||||||| |||| ||||||   |||  | |||||||| ||||  |||||| || |||||  ||||||||    
T  26629547 cattatgtagaaaacaaaaaattctacaatgttacggtcaaaatgagaaaaacaaaaatgaaattcattttaaatgatttacaactcataacaataaagg 26629448  T
Q  116 aaatgttaattcatgagatacattaaagagaaa 148  Q
    |||| ||| |||||||||||| ||||| |||||    
T  26629447 aaatattatttcatgagatactttaaatagaaa 26629415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 26640411 - 26640358
Alignment:
Q  95 tataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaa 148  Q
    |||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  26640411 tatatgtcatacgaatgaaggaaatgttaattcatgagatacaataaagagaaa 26640358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 26735523 - 26735391
Alignment:
Q  18 cattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaa--ttaaattcatcttaagagatttataagtcatatgaataaagg 115  Q
    ||||||| ||||| ||||||||||||  |||||||||| |||| ||||||   |||  | |||||||| ||||  |||||| || |||||  ||||||||    
T  26735523 cattatgtagaaaacaaaaaattctacaatgttacggtcaaaatgagaaaaacaaaaatgaaattcattttaaatgatttacaactcataacaataaagg 26735424  T
Q  116 aaatgttaattcatgagatacattaaagagaaa 148  Q
    |||| ||| |||||||||||| ||||| |||||    
T  26735423 aaatattatttcatgagatactttaaatagaaa 26735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 26746377 - 26746324
Alignment:
Q  95 tataagtcatatgaataaaggaaatgttaattcatgagatacattaaagagaaa 148  Q
    |||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  26746377 tatatgtcatacgaatgaaggaaatgttaattcatgagatacaataaagagaaa 26746324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 26640331 - 26640274
Alignment:
Q  233 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 292  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26640331 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26640274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 292
Target Start/End: Complemental strand, 26746297 - 26746240
Alignment:
Q  233 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttcgttttgcca 292  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| |||  |||||||    
T  26746297 ttggaagtacaaaaccaaaact--gagttatgaaacgaaattctccatttccatttgcca 26746240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 26629401 - 26629362
Alignment:
Q  182 tggaagaaaaaatatatggagtagcagataaaagtaaatt 221  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26629401 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26629362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 182 - 221
Target Start/End: Complemental strand, 26735377 - 26735338
Alignment:
Q  182 tggaagaaaaaatatatggagtagcagataaaagtaaatt 221  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26735377 tggaagaaaaaatatatggagtagcagataaaaggaaatt 26735338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 27506761 - 27506803
Alignment:
Q  233 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattc 275  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  27506761 ttggaagtacaaaaccaaaactttgagctatgaaacgatattc 27506803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 26964767 - 26964723
Alignment:
Q  310 ataggagaaaggtttctttataccataaagttcatacatataaat 354  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||    
T  26964767 ataggaaaaaggcttctttataccatcaagttcatacatataaat 26964723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 28783694 - 28783611
Alignment:
Q  108 aataaaggaaatgttaattcatgagatacattaaagagaaacaaagtaccaatttgtaagacttcaaaatgaaatggaagaaaa 191  Q
    |||||||||||| ||||  ||||||||||||||||||||||    | ||| |||||| ||| ||| ||| ||||||||||||||    
T  28783694 aataaaggaaatattaaaccatgagatacattaaagagaaatgttgaaccgatttgtcagaattccaaaagaaatggaagaaaa 28783611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 27606872 - 27606969
Alignment:
Q  131 agatacattaaagagaaacaaagtaccaatttgtaag-acttcaaaatgaaatggaagaaaaaatatatggagtagcagataaaagtaaattaattttt 228  Q
    ||||||||||||||||||    | ||||||||||||| |||| ||||| |||| |||||||||| |||   ||||| ||||||||||| ||||||||||    
T  27606872 agatacattaaagagaaatgtcgaaccaatttgtaagaacttaaaaat-aaatagaagaaaaaagataacaagtaggagataaaagtatattaattttt 27606969  T

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Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 27422971 - 27423031
Alignment:
Q  375 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 435  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  27422971 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 27423031  T

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Target: scaffold0713 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 3511 - 3587
Alignment:
Q  576 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttc 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3511 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttc 3587  T

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Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 14648681 - 14648757
Alignment:
Q  576 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttc 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14648681 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttc 14648757  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 14658471 - 14658547
Alignment:
Q  576 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttc 652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14658471 gatgtagacaaaacatggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttc 14658547  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 592 - 652
Target Start/End: Complemental strand, 17654956 - 17654897
Alignment:
Q  592 ggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttc 652  Q
    ||||||||||||||||||||| |||||||||| ||| |||||||||||||||  |||||||    
T  17654956 ggaagctactagatttttccctcacacccttt-ctctttctctttcccgtatcactctttc 17654897  T

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Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 576 - 652
Target Start/End: Complemental strand, 27199878 - 27199802
Alignment:
Q  576 gatgtagacaaaacatggaagctactagatttttcccacacaccctttgctcattctctttcccgtattcctctttc 652  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27199878 gatgtagacaaaacacggaagctactagatttttcccacacacccttttctcattctctttcccgtattcctctttc 27199802  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 64531 - 64475
Alignment:
Q  199 ggagtagcagataaaagtaaattaattttttctattggaagtacaaaaccaaaactt 255  Q
    ||||||||||||  |||||||||||||||| |||||| |||||||||||||||||||    
T  64531 ggagtagcagatcgaagtaaattaatttttcctattgtaagtacaaaaccaaaactt 64475  T

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Target: scaffold0003; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Complemental strand, 64651 - 64532
Alignment:
Q  18 cattatgcagaaaccaaaaaattctaatatgttacggttaaaacgagaaagttaaattaaattcatcttaagagatttataagtcatatgaataaaggaa 117  Q
    ||||||||||||| ||||||||||| | |||||||||| |||| |||||| | |||| |||||||  |||| | ||| |||| |||||||    ||||||    
T  64651 cattatgcagaaaacaaaaaattctgacatgttacggtcaaaatgagaaaataaaatgaaattcagtttaaaatattaataaatcatatg----aaggaa 64556  T
Q  118 atgttaattcatgagatacattaa 141  Q
    || | ||||| |||||||||||||    
T  64555 atatgaattcttgagatacattaa 64532  T

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Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 64392 - 64332
Alignment:
Q  375 ttttgcaatttgtaattctctgaagtatctatttgactgtgatagaagatgaagtttgtat 435  Q
    ||||||||||| |||| |  | || ||||||||| ||||||||| ||||||||||||||||    
T  64392 ttttgcaatttttaatcccttaaactatctatttaactgtgatataagatgaagtttgtat 64332  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 18719305 - 18719354
Alignment:
Q  232 attggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 283  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  18719305 attggaagtacaaaaccaaaact--gacttatgaaacgaaattctccacttc 18719354  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 18674703 - 18674751
Alignment:
Q  233 ttggaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 283  Q
    |||||||||||||||||||||  ||| |||||||| |||||||||||||||    
T  18674703 ttggaagtacaaaaccaaaac--tgatttatgaaatgaaattctccacttc 18674751  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 18692787 - 18692832
Alignment:
Q  236 gaagtacaaaaccaaaactttgagttatgaaacgaaattctccacttc 283  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||    
T  18692787 gaagtacaaaaccaaaact--gatttatgaaatgaaattctccacttc 18692832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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