View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_low_10 (Length: 330)
Name: NF13335_low_10
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 547998 - 548302
Alignment:
| Q |
11 |
cagagagaatcaatgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
547998 |
cagagagaatcaatgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagaga |
548097 |
T |
|
| Q |
111 |
gattgagcgatgtaaggtggttcaatcgaaaacaagagattacacatagaagcccatcgagatcaccaccaaagcaagtgaggttaagggaggtgaggtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
548098 |
gattgagcgatgtaaggtggttcaatcgaaaacaagagattacacatagaagcccatcgagatcaccaccaaagcaagtgaggttaagggaggtgaggtt |
548197 |
T |
|
| Q |
211 |
agtaaatctaatgaagaggcgaggaagaaaagggcgtgtttgattatagactgtgagtgggagtggaagattattggtgatggagagaaactgttttgag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
548198 |
agtaaatctaatgaagaggcgaggaagaaaagggcgtgtttgattatagactgtgagtgagagtggaagattattggtgatggagagaaactgttttgag |
548297 |
T |
|
| Q |
311 |
acaac |
315 |
Q |
| |
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||||| |
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|
| T |
548298 |
acaac |
548302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 8186423 - 8186315
Alignment:
| Q |
20 |
tcaatgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagagagattgagcg |
119 |
Q |
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|||||||||||||| ||||| ||| |||||||||||| ||||| | || ||| |||| ||||||| |||||| ||||| ||||||||||||||| | |
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| T |
8186423 |
tcaatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtg |
8186324 |
T |
|
| Q |
120 |
atgtaaggt |
128 |
Q |
| |
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|||| |||| |
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| T |
8186323 |
atgtgaggt |
8186315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 1755548 - 1755651
Alignment:
| Q |
23 |
atgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagagagattgagcgatg |
122 |
Q |
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||||||||||| ||||||||| |||||||||||| |||| | | ||| ||||||| || || ||||||||| | ||||||| |||||||| | ||||| |
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| T |
1755548 |
atgttggaacatgtgagagaggtcaaagttgtaatcttttgagagaaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaacgatg |
1755647 |
T |
|
| Q |
123 |
taag |
126 |
Q |
| |
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|||| |
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|
| T |
1755648 |
taag |
1755651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 55907745 - 55907703
Alignment:
| Q |
14 |
agagaatcaatgttggaacaagtgagagagttcaaagttgtaa |
56 |
Q |
| |
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|||||| |||||||||||||| ||||||| ||||||||||||| |
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|
| T |
55907745 |
agagaagcaatgttggaacaaatgagagaattcaaagttgtaa |
55907703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 3437691 - 3437643
Alignment:
| Q |
13 |
gagagaatcaatgttggaacaagtgagagagttcaaagttgtaaacttt |
61 |
Q |
| |
|
|||| |||||| |||||||||| |||||||| |||||||||||| |||| |
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| T |
3437691 |
gagaaaatcaaagttggaacaactgagagaggtcaaagttgtaatcttt |
3437643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 21833340 - 21833244
Alignment:
| Q |
21 |
caatgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaatgaagggttggttagagagattgag |
117 |
Q |
| |
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|||| |||||||||||||||||| ||||||| |||| ||| |||| || ||| |||| |||| || ||||||| ||||| ||| |||| |||||| |
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| T |
21833340 |
caattttggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgag |
21833244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 513558 - 513447
Alignment:
| Q |
201 |
aggtgaggttagtaaatctaatgaagaggcgaggaagaaaagggcgtgtttgattatagactgtgagtgggagtggaagattattggtgatggagagaaa |
300 |
Q |
| |
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|||||||||| ||||||||| || ||||||||| || |||||| | |||||| || ||| ||||| | || | | ||||| |||||||||||||| || |
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| T |
513558 |
aggtgaggttggtaaatctacggaggaggcgagggaggaaagggagggtttgaatacggacagtgagagagaatcggagattgttggtgatggagagtaa |
513459 |
T |
|
| Q |
301 |
ctgttttgagac |
312 |
Q |
| |
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|||||||||||| |
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|
| T |
513458 |
ctgttttgagac |
513447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 51763455 - 51763382
Alignment:
| Q |
19 |
atcaatgttggaacaagtgagagagttcaaagttgtaaactttcgtgcgaagacttgcaagccatttgtgggaa |
92 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| |||| ||| || ||| |||| |||||||| |||| |
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| T |
51763455 |
atcaatgtgggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttgtaggaa |
51763382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 41900384 - 41900269
Alignment:
| Q |
197 |
agggaggtgaggttagtaaatctaatgaagaggcgaggaagaaaagggcgtgtttgattatagactgtgagtgggagtggaagattattggtgatggaga |
296 |
Q |
| |
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||||||||||| || ||||||||| ||||| ||||||||||||| | ||||||| | ||| ||| || | || | ||||| | ||||||||||||| |
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| T |
41900384 |
agggaggtgagattggtaaatctatgaaagagagtaggaagaaaagggagagtttgatcacagattgtaagagagaatcgaagagtgttggtgatggaga |
41900285 |
T |
|
| Q |
297 |
gaaactgttttgagac |
312 |
Q |
| |
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|||||||||| ||||| |
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|
| T |
41900284 |
gaaactgtttggagac |
41900269 |
T |
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