View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13335_low_13 (Length: 234)
Name: NF13335_low_13
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 44226432 - 44226631
Alignment:
| Q |
18 |
atgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44226432 |
atgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaat |
44226531 |
T |
|
| Q |
118 |
taagcattcggcatccaagttagataattttagatataaagtttaccacctttgatctacaagtgatttatatgattttatttacctggagacttggatc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44226532 |
taagcattcggcatccaagttagataattttagatataaagtttaccacctttgatctacaagtgagttatatgattttatttacctggagacttggatc |
44226631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 44237230 - 44237429
Alignment:
| Q |
18 |
atgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaat |
117 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44237230 |
atgaacatcatgttggctgatataagccgcagttctttgaggtacaaactcgttcagtccatggccattgtaagtcacactcccagttagctgtacgaat |
44237329 |
T |
|
| Q |
118 |
taagcattcggcatccaagttagataattttagatataaagtttaccacctttgatctacaagtgatttatatgattttatttacctggagacttggatc |
217 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
44237330 |
taagaattcggcatccaaattaaataattttagatataaagtttaccacctttgagctactaatgagttatatgattttatttacctgaagacttggatc |
44237429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 44214263 - 44214406
Alignment:
| Q |
19 |
tgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagttagctgtacaaatt |
118 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| ||||| || ||||| |
|
|
| T |
44214263 |
tgaacatcatgctggctgatataagcagcagttctttgaggtacaaactcattcagtccgtgtccattgtaggtcacattcccagatagctatataaatt |
44214362 |
T |
|
| Q |
119 |
aagcattcggcatccaagttagataattttagatataaagtttac |
163 |
Q |
| |
|
|| |||| || ||| || ||| |||||||| |||| |||||||| |
|
|
| T |
44214363 |
aaacatt-ggtatcaaaattatgtaattttaaatattaagtttac |
44214406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 2901794 - 2901879
Alignment:
| Q |
18 |
atgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccag |
103 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||||||||||| |||| || ||||| ||||| |||||||| ||||||| |
|
|
| T |
2901794 |
atgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccatcccatgtccattataagtcactctcccag |
2901879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 2873031 - 2872954
Alignment:
| Q |
18 |
atgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcac |
95 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||||||||||||| |||| || ||||| ||||| |||||||| |
|
|
| T |
2873031 |
atgaacatcatgttgactaatatatgcagcagttctttgaggtacaaattcatccattccatatccattataagtcac |
2872954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 2883233 - 2883150
Alignment:
| Q |
18 |
atgaacatcatgttggcttatataggcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactccc |
101 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||| ||||||||||| |||| || ||||| ||||| ||||| || ||||| |
|
|
| T |
2883233 |
atgaacatcatgttgactaatatatgcagcagttctctgaggtacaaattcatccatcccatgtccattataagttactctccc |
2883150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 39578202 - 39578263
Alignment:
| Q |
43 |
gcagcagttctttgaggtacaaactcattcagtccatggccattgtaagtcacactcccagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || ||||||||||| ||||||| |
|
|
| T |
39578202 |
gcagcagttctttgaggtacaaactcattcatctcatgaccgttgtaagtcaccttcccagt |
39578263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University