View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_low_2 (Length: 580)
Name: NF13335_low_2
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 36525175 - 36524972
Alignment:
| Q |
17 |
acctcaaactcaaaagtttaccactttctttatcaaaatctggaaatgatatatggtctcttagactcataggcttataggtataaccctcattttcttc |
116 |
Q |
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| T |
36525175 |
acctcaaactcaaaagtttaccactttctttatcaaaatctggaaatgatatatggtctcttagactcataggcttataggtataaccctcattttcttc |
36525076 |
T |
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| Q |
117 |
ttgtatttcatctccaaaaataaattcaattgattgtccactttcaagctgatcaaaactttcttgaatatttataccaacaaagtccttctttttagta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36525075 |
ttgtatttcatctccaaaaataaattcaattgattgtccactttcaagctgatcaaaactttcttgaatatttataccaacaaagtccttctttttagta |
36524976 |
T |
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| Q |
217 |
ctat |
220 |
Q |
| |
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|||| |
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| T |
36524975 |
ctat |
36524972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 346 - 569
Target Start/End: Original strand, 36522119 - 36522342
Alignment:
| Q |
346 |
caatcaacttaaagcttccatttattgctaacccttaacgtatcttccaatatatgttgacagattcccacttttttggtcctcaaatccctttacacat |
445 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36522119 |
caatcaacttaaagcttcaatttattgctaacccttaacgtatcttccaatatatgttgacatattcccacttttttggtcctcaaatccctttacacat |
36522218 |
T |
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| Q |
446 |
tcaaataacgctattctaggaccaaaaagtacaagtatacatgatctttcacagcccactttacactaacttcaatgttaatagttccttcttaccaaag |
545 |
Q |
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| T |
36522219 |
tcaaataacgctattctaggaccaaaaagaacaagtatacatgatctttcacaacccactttacactaacttcaatgctaatagttccttcttaccaaaa |
36522318 |
T |
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| Q |
546 |
cattggaaaaagcccatgatgatg |
569 |
Q |
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|||||||||||||||||||||||| |
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| T |
36522319 |
cattggaaaaagcccatgatgatg |
36522342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 36521985 - 36522048
Alignment:
| Q |
212 |
tagtactatagtatatcactttttctaacttctaactaaccaaatggccattgaatagtgacca |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36521985 |
tagtactatagtatatcactttttctaacttctaactaaccaaatggccattgaatagtgacca |
36522048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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