View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_low_3 (Length: 483)
Name: NF13335_low_3
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 184 - 431
Target Start/End: Original strand, 41342449 - 41342696
Alignment:
| Q |
184 |
aaattaagtaagctttataactcaccttctctcggcttcttccactgattattgctgttggaaaataagtagcaacttcagatactgctgcacgcatctg |
283 |
Q |
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| T |
41342449 |
aaattaagtaagctttataactcaccttctctcggcttcttccactgattattgctgttggaaaataagtagcaacttcagatactgctgcacgcatctg |
41342548 |
T |
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| Q |
284 |
ccatttatttgtattaatatcaaattaaattaaacaccacatgatctttattgtaaacattattatttcagnnnnnnnttgacgcaattaatatgaaatt |
383 |
Q |
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| T |
41342549 |
ccatttatttgtattaatatcaaattaaattaaacaccacatgatctttattgtaaacattattatttcagaaaaaaattgacgcaattaatatgaaatt |
41342648 |
T |
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| Q |
384 |
aaaaaagaacaaacacgcatttgtggttgtaatgtactataggaatgg |
431 |
Q |
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| T |
41342649 |
aaaaaagaacaaacacgcatttgtggttgtaatgtactataggaatgg |
41342696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 41342268 - 41342404
Alignment:
| Q |
11 |
gtagcataggtggttgccgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcaca |
110 |
Q |
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| T |
41342268 |
gtagcattggtggttgccgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcaca |
41342367 |
T |
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| Q |
111 |
aaatcttttacctaaaccaaaaagttatataatgaga |
147 |
Q |
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| T |
41342368 |
aaatcttttacctaaaccaaaaagttatataatgaga |
41342404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 317
Target Start/End: Complemental strand, 18219898 - 18219860
Alignment:
| Q |
279 |
atctgccatttatttgtattaatatcaaattaaattaaa |
317 |
Q |
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| T |
18219898 |
atctgccatttatttatgttaatatcaaattaaattaaa |
18219860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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