View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_low_6 (Length: 432)
Name: NF13335_low_6
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 47126543 - 47126964
Alignment:
| Q |
1 |
tttctgttcttcaaacttgggtctttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcag |
100 |
Q |
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| T |
47126543 |
tttctgttcttcaaacttgggtccttgttccttttcatgatattattctcaatctccagtagcttctgtgaaaatcgcctaaatgctgccaatggttcag |
47126642 |
T |
|
| Q |
101 |
cgtctgcagtccaatcagggtctactgtctgcccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttg |
200 |
Q |
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| T |
47126643 |
cgtctgcagtccaatcagggtctactgtctgtccaagataaacctcttcagtcgaatgcctagacagaacttctatcaatgacacaccaagaagagtttg |
47126742 |
T |
|
| Q |
201 |
gaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaacc |
300 |
Q |
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| T |
47126743 |
gaactgagctgtgattgtttttaagaatgctaattcaggatctgactcaagctcttcatactctggtgtaccttgctcaggcataaacctacgactaacc |
47126842 |
T |
|
| Q |
301 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattgta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47126843 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatataataatggtgcaagattgta |
47126942 |
T |
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| Q |
401 |
tgagatcgattcttgtcttcat |
422 |
Q |
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| T |
47126943 |
tgagatcgattcttgtcttcat |
47126964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 9606339 - 9606270
Alignment:
| Q |
319 |
taacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatgg |
388 |
Q |
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| T |
9606339 |
taacctccataaggatattgtccaaaattaacagctgcatgaagagcagaagcagtccatatgataatgg |
9606270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 46709155 - 46709234
Alignment:
| Q |
301 |
gttggacgatttggtaggtaacctgcataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatat |
380 |
Q |
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| T |
46709155 |
gttggacggtttggtgagtaacctgcaaaaggatattgtccaaagtttacagctgcatgtagagctgaagcaatccatat |
46709234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 398
Target Start/End: Original strand, 6456151 - 6456223
Alignment:
| Q |
326 |
cataagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
398 |
Q |
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| T |
6456151 |
cataaggatactgtccaaagttaactgctgcatgaagagctgaagcagtccatatgataatggagcaagattg |
6456223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 398
Target Start/End: Original strand, 6449686 - 6449756
Alignment:
| Q |
328 |
taagggtattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaagattg |
398 |
Q |
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| T |
6449686 |
taaggatattgtccgaaattaacagctgcatgaagagcagaagcagtccatataataatggagcaagattg |
6449756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 7457984 - 7458044
Alignment:
| Q |
334 |
tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag |
394 |
Q |
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| T |
7457984 |
tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag |
7458044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 394
Target Start/End: Original strand, 7470386 - 7470446
Alignment:
| Q |
334 |
tattgtccaaagttcacagctgcatgaaaagcagaagccacccatatgataatggtgcaag |
394 |
Q |
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| T |
7470386 |
tattgtccaaaattaacagctgcatgaagtgctgaagcaatccatatgagaatggtgcaag |
7470446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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