View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_low_8 (Length: 377)
Name: NF13335_low_8
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 49823174 - 49823536
Alignment:
| Q |
1 |
aagtgacgtgcttgtatattttaatcagtccttatctatccatggcaattcaatgatgacccatttcaagtttgaacaaacacgacattattaccagtca |
100 |
Q |
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| T |
49823174 |
aagtgacgtgcttgtatattttaatcagtccttatctatccatgccaattcaatgatgacccatttcaagtttgaacaaacacgacattattaccagtca |
49823273 |
T |
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| Q |
101 |
gcatcttgtcagcatgcaatgcactgataaatctcaaaaacacaacatacacatttcttcatttcttgtttcacttccaaacgtctcttcttcttttcaa |
200 |
Q |
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| T |
49823274 |
gcatcttgtcagcattcaatgcactgataaatctcaaaaacacaaca----catttcttcatttcttgtttcacttccaaacgtctcttcttcttttcaa |
49823369 |
T |
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| Q |
201 |
actcccctgttttcatcttcacaattaaacagacacagaacataaaataaaataaaacaaaacgaaagatccatttttgtcttccttgatcgttgaaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49823370 |
actcccctgttttcatcttcacaattaaacagacacagaacataaaataaaataaaacaaaacgaaagatccatttttgtcttccttgatcgttgcaaat |
49823469 |
T |
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| Q |
301 |
atgctgagccgtcggatttgccagagaagagctttgatctacggccagagattgttccgtctctctg |
367 |
Q |
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| T |
49823470 |
atgctgagccgttggatttgccagagaagagctttgatctacggccagagattgttccgtctctctg |
49823536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22292565 - 22292607
Alignment:
| Q |
1 |
aagtgacgtgcttgtatattttaatcagtccttatctatccat |
43 |
Q |
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| T |
22292565 |
aagtgacgtgcttctataatttaatcggtccttatctatccat |
22292607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22298162 - 22298204
Alignment:
| Q |
1 |
aagtgacgtgcttgtatattttaatcagtccttatctatccat |
43 |
Q |
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||||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
22298162 |
aagtgacgtgcttctatagtttaatcggtccttatctatccat |
22298204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13643115 - 13643073
Alignment:
| Q |
1 |
aagtgacgtgcttgtatattttaatcagtccttatctatccat |
43 |
Q |
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||||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
13643115 |
aagtgacgtgcttctatagtttaatcggtccttatctatccat |
13643073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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