View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13335_low_9 (Length: 367)
Name: NF13335_low_9
Description: NF13335
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13335_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 19769822 - 19769658
Alignment:
| Q |
17 |
tccacacctgtttaaaaaattcagtgccttgggtttccatatacaccagaaaaataggagcaacaaaaaatatgaattatcaatcatcataaatgcttca |
116 |
Q |
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| T |
19769822 |
tccacacctgtttaaaaaattcagtgccttggttttccatatacaccagaaaaataggagcaacaaaaaacatgaattatcaatcatcataaatgcttca |
19769723 |
T |
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| Q |
117 |
atagaataattgagatcatatgaacatatttaagcaatagttaatataagccc-tttcaatatat |
180 |
Q |
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| T |
19769722 |
atagaataattgagatcatatgaacatatttaagcaatagttaatataagcccttttcaatatat |
19769658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 221 - 350
Target Start/End: Complemental strand, 19769617 - 19769488
Alignment:
| Q |
221 |
tgaagattgttagcaagtagagaggaaggaaaaaagaatgatcgctttaatggtaaggtattctgttcagagagatcttcgcttggatacttaccaggtc |
320 |
Q |
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| T |
19769617 |
tgaagattgttagcaagtagagaggaaggaaaaaagaatgatcgctttaatggtaaggtattctgttcagagagatcttcgcttggatacttaccaggtc |
19769518 |
T |
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| Q |
321 |
caggcatatccaagcgaaaaagcaaagaac |
350 |
Q |
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| T |
19769517 |
caggtatatccaagcgaaaaagcaaagaac |
19769488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 44162452 - 44162309
Alignment:
| Q |
37 |
tcagtgccttgggtttccatatacaccagaaaaataggagca--acaaaaaatatgaattatcaatcatcataaa--tgcttcaatagaataattgagat |
132 |
Q |
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| T |
44162452 |
tcagtgccttggttttccatatacaccataaaa-taggagcacaaaaaaaaacacgaattgtcaatcatcatatacatgcttcaatagaatacttgagat |
44162354 |
T |
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| Q |
133 |
catatgaacatatttaagcaatagttaatataag-ccctttcaatatat |
180 |
Q |
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| T |
44162353 |
catatgtacatatttcagcaa----taatataagtccctttcaatatat |
44162309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 44711108 - 44711162
Alignment:
| Q |
21 |
cacctgtttaaaaaattcagtgccttgggtttccatatacaccagaaaaatagga |
75 |
Q |
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| T |
44711108 |
cacctgtttaaaaaactcagttccttgattttccatatacaccagaaaaatagga |
44711162 |
T |
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