View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13336_high_1 (Length: 687)
Name: NF13336_high_1
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 16 - 680
Target Start/End: Original strand, 36157102 - 36157769
Alignment:
| Q |
16 |
cacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36157102 |
cacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatca |
36157201 |
T |
|
| Q |
116 |
tacatgctttggaaactcaagaattgtttccctttcatgcagttagcatctaagatgcattttaaagacctaaaagagttcatgcagctatgccctatca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
36157202 |
tacatgctttggaaactcaagaattgtttccttttcatgcagttagtatctaagatgcattttaaagagctaaaagagttcatgcagctacgccctatca |
36157301 |
T |
|
| Q |
216 |
tggacatgtcattatcgcttatgatagagggagaaaaatgtaacatacctgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacc |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36157302 |
tggacatgtcattatcgcttatgttagagggagaaaaatgtaacatacctgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacc |
36157401 |
T |
|
| Q |
316 |
cagagcaatgttagatcaagcctgagcagc-aaaataaacagacaaaagttagatggaaggtatataaaactatcaagatgttaccaaatatagaagata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36157402 |
cagagcaatgttagatcaagcctgagcagcaaaaataaacagacaaaagttagatggaaggtatataaaactatcaagacgttaccaaatatagaagata |
36157501 |
T |
|
| Q |
415 |
catactaataaacataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagagcaagaactcctgacca |
514 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36157502 |
catactaataaatataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagagcaagaactcctgacca |
36157601 |
T |
|
| Q |
515 |
tacatgagtgtagataataatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatagatagcagaaataaaccacaatc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36157602 |
tacatgagtgtagataataatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatagatagcagaaataaaccacagtc |
36157701 |
T |
|
| Q |
615 |
--cacagagacaaaagatcaaatcatggacaaattcaggccaggcactta-attattttgttcatctca |
680 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36157702 |
aacagagagacaaaagatcaaatcatggac-aattcaggccaggcacttacattattttgttcatctca |
36157769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 27 - 609
Target Start/End: Original strand, 36152190 - 36152767
Alignment:
| Q |
27 |
tctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatattaatatatcatacatgctttg |
126 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36152190 |
tctagtttgaagagttcgatctctcaagtctgataatccttcgttccatctgcaaattgatcaaagtaatcaaacatattaatatatcata--tgctttg |
36152287 |
T |
|
| Q |
127 |
gaaactcaagaattgtttccctttcatgcagttagcatctaagatgcattttaaagacctaaaagagttcatgcagctatgccctatcatggacatgtca |
226 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36152288 |
gaaactcaagaattgtttccccttcatgcagttagtatctaagatgcattttaaagagctaaaagagttcatgcagctatgccctatcatggacatgtcg |
36152387 |
T |
|
| Q |
227 |
ttatcgcttatgatagagggagaaaaatgtaacatacctgaacaaaggtctccaactttctcttggtagtagcaaactgatgttttacccagagcaatgt |
326 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
36152388 |
ttgtcgcttatgtgagagggagaaaaatgtaacatacctgaacaaaggcctccaactttctcttggtattggcaaactcatgttttacccagagcaatgt |
36152487 |
T |
|
| Q |
327 |
tagatcaagcctgagcagcaaaataaacagacaaaagttagatggaaggtatataaaactatcaagatgttaccaaatatagaagatacatactaataaa |
426 |
Q |
| |
|
| || ||||||||||||||||||||| |||||||| |||||| | |||||||||||| |||||||| ||||||||||||||||||| |||| |||| |
|
|
| T |
36152488 |
tcgagaaagcctgagcagcaaaataaatagacaaaaattagatcggaggtatataaaattatcaagactttaccaaatatagaagatagatac---taaa |
36152584 |
T |
|
| Q |
427 |
cataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagagcaagaactcctgaccatacatgagtgta |
526 |
Q |
| |
|
|| ||||| ||||| ||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
36152585 |
tatgaaatatatttacatattctaatacgcgtcaatccaatttcttatttaattttttcttaaaagaaagagcaagagctcttgaccatacatgagtgta |
36152684 |
T |
|
| Q |
527 |
gataa-taatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatag--atagcagaaataaacca |
609 |
Q |
| |
|
||||| || |||||||||||||| ||||| | || ||||||||||||||||||||||| |||||| |||||||||||| |||| |
|
|
| T |
36152685 |
gataattattttatttgtttcct---aggtcatatttagtattcttctacaaaagaagttgtaatagatatagcagaaatagacca |
36152767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 422
Target Start/End: Complemental strand, 41708338 - 41708300
Alignment:
| Q |
384 |
actatcaagatgttaccaaatatagaagatacatactaa |
422 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
41708338 |
actatcaagatgttactaaatatataagatacatactaa |
41708300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 25160251 - 25160284
Alignment:
| Q |
384 |
actatcaagatgttaccaaatatagaagatacat |
417 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
25160251 |
actatcaagatgttaccaaatataaaagatacat |
25160284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University