View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_high_15 (Length: 227)
Name: NF13336_high_15
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 14879267 - 14879486
Alignment:
| Q |
7 |
tgtgggtggtagcatgctacctacaatggattcgtcacgaagcttctatcttgttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatatt |
106 |
Q |
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| T |
14879267 |
tgtgggtggtagcatgctacctacaatggattcgtcacgaagcttctatctttttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatatt |
14879366 |
T |
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| Q |
107 |
gtatgtttacgctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacg |
206 |
Q |
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| T |
14879367 |
gtatgtttacgctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacg |
14879466 |
T |
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| Q |
207 |
gttataagcgtgaaacagtt |
226 |
Q |
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| T |
14879467 |
gttataagcatgaagcagtt |
14879486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 14872047 - 14872263
Alignment:
| Q |
10 |
gggtggtagcatgctacctacaatggattcgtcacgaagcttctatcttgttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatattgta |
109 |
Q |
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| T |
14872047 |
gggtgctagcatgctacctacaattgattcgacaccaagcatgtttcttgctgaaagaatctcacctcgatttggtaaagttgctcacggagatattgta |
14872146 |
T |
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| Q |
110 |
tgtttacgctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacggtt |
209 |
Q |
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| T |
14872147 |
cgtttacgctctcctcaaaaccctagagaaagctacggaaagcgcgtgattggattagagggtgatagcattacatatattgctgatcgtggaaacggct |
14872246 |
T |
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| Q |
210 |
ataagcgtgaaacagtt |
226 |
Q |
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| T |
14872247 |
ataagcatgaaacagtt |
14872263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 14898273 - 14898484
Alignment:
| Q |
16 |
tagcatgctacctacaa-tggattcgtcacgaagcttctatcttgttgaaacaatctcacctcgatttggtaaaattgctcgcggtgatattgtatgttt |
114 |
Q |
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| T |
14898273 |
tagcatgcttcctacaaatcgattcgacaccaagcatctttcttgctgaaaggatctcacctcgatttggcaaagttgctcgcggagatattttacattt |
14898372 |
T |
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| Q |
115 |
acgctctcctacaaaccctagagagagctacgtaaagcgcgtgattggattagagggtgatagcattacatatgttgctgatcgtggaaacggttataag |
214 |
Q |
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| T |
14898373 |
acgctctcctcaaaaccctaaaaaggaaatcggaaagcgcttggttggattagagggtgataccattacatatgtttctgattccgaaaacggtgataag |
14898472 |
T |
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| Q |
215 |
cgtgaaacagtt |
226 |
Q |
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| T |
14898473 |
catgagacagtt |
14898484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 14868262 - 14868311
Alignment:
| Q |
148 |
aaagcgcgtgattggattagagggtgatagcattacatatgttgctgatc |
197 |
Q |
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| T |
14868262 |
aaagcgcttggttggattagagggcgataccattacatatgttgctgatc |
14868311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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