View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13336_high_16 (Length: 226)

Name: NF13336_high_16
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13336_high_16
NF13336_high_16
[»] chr1 (11 HSPs)
chr1 (20-209)||(960137-960326)
chr1 (20-209)||(949165-949354)
chr1 (20-177)||(942208-942365)
chr1 (20-177)||(971478-971635)
chr1 (20-162)||(936303-936445)
chr1 (23-158)||(909557-909692)
chr1 (46-168)||(924080-924202)
chr1 (48-154)||(901845-901951)
chr1 (64-144)||(975127-975207)
chr1 (55-158)||(916039-916142)
chr1 (64-144)||(419954-420034)
[»] scaffold0312 (1 HSPs)
scaffold0312 (64-144)||(10537-10617)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 960326 - 960137
Alignment:
Q  20 atttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  960326 atttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 960227  T
Q  120 gaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaaatgcaagttcaatttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  960226 gaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaattgcaagttcaatttt 960137  T

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Target: chr1; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 949354 - 949165
Alignment:
Q  20 atttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  949354 atttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccaatttgtttgat 949255  T
Q  120 gaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctctttgaaatgcaagttcaatttt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  949254 gaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtctcttggaattgcaagttcaatttt 949165  T

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Target: chr1; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 942365 - 942208
Alignment:
Q  20 atttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  942365 atttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 942266  T
Q  120 gaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttg 177  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  942265 gaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttg 942208  T

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Target: chr1; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 971635 - 971478
Alignment:
Q  20 atttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971635 atttgcttcacactcacttattgttctcttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 971536  T
Q  120 gaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttg 177  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  971535 gaaaagggtatggaattagcaacttctttaggcaagaattttgctccactattatttg 971478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 936445 - 936303
Alignment:
Q  20 atttgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgat 119  Q
    |||| |||||||||||||||||||  | ||||||||||||| ||| | || ||||||||||||||| |||  ||| || |||||||| | |||| ||||     
T  936445 attttcttcacactcacttattgtgttcttcacaatttcagattcttctgttccttccttgatggagaacaagttaaggatgttttcaactttgcttgaa 936346  T
Q  120 gaaaagggtatggaattagcaacttctctaggcaagaattttg 162  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||    
T  936345 gaaaaaggtattgaattagcaacttctttaggcaagaattttg 936303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 909692 - 909557
Alignment:
Q  23 tgcttcacactcacttattgttcttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaa 122  Q
    ||||||||| |||||||||||  | ||||||||||||| |||| | ||||||| ||||||||| || | ||| || |||||||||| |||||||||||||    
T  909692 tgcttcacattcacttattgtgttcttcacaatttcagattccgtcgatccttgcttgatggagaagtagttaaggatgttttccaatttgtttgatgaa 909593  T
Q  123 aagggtatggaattagcaacttctctaggcaagaat 158  Q
    ||||| |||||||| ||||| || | ||||||||||    
T  909592 aagggaatggaattcgcaacgtcaccaggcaagaat 909557  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 924202 - 924080
Alignment:
Q  46 ttttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttc 145  Q
    ||||||||||||||  ||||   ||||||| ||||||||| || | ||| || |||||||||| ||||||||||||||| ||||||||||||||||||||    
T  924202 ttttcacaatttcatattccgccgatccttgcttgatggagaagtagttaaggatgttttccactttgtttgatgaaaatggtatggaattagcaacttc 924103  T
Q  146 tctaggcaagaattttgttccat 168  Q
     | |||||||||| ||| |||||    
T  924102 acgaggcaagaatgttgctccat 924080  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 901951 - 901845
Alignment:
Q  48 ttcacaatttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctc 147  Q
    |||||||||| ||  || |||||||||| |||||||||||| | ||| || || ||||||| |||||||||||||||||| ||||||||||||||||| |    
T  901951 ttcacaattttagactcttttgatccttgcttgatggaaaagtggttaaggattttttccactttgtttgatgaaaagggaatggaattagcaacttcac 901852  T
Q  148 taggcaa 154  Q
     ||||||    
T  901851 gaggcaa 901845  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 975207 - 975127
Alignment:
Q  64 cctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt 144  Q
    ||||||| |||| |||||||   |||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||    
T  975207 cctttgaccctttcttgatgtttaacttgttgattatgtattccatcttgtttgatgaaaagggtattgaattagcaactt 975127  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 916142 - 916039
Alignment:
Q  55 tttcagcttcctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaa 154  Q
    |||||| ||||  |||||||| ||||||||| || |  || || |||||||||| ||||||||||||||| |||||||||||||| ||||| | ||||||    
T  916142 tttcagattccgctgatccttgcttgatggagaagtaattaaggatgttttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaa 916043  T
Q  155 gaat 158  Q
    ||||    
T  916042 gaat 916039  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 419954 - 420034
Alignment:
Q  64 cctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt 144  Q
    ||||||| |||| |||||||   |||||||||| ||||| |||||  |||||| ||||||| ||||| |||||||||||||    
T  419954 cctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaactt 420034  T

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Target: scaffold0312 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Complemental strand, 10617 - 10537
Alignment:
Q  64 cctttgatccttccttgatggaaaacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt 144  Q
    ||||||| |||| |||||||   |||||||||| ||||| |||||  |||||| ||||||| ||||| |||||||||||||    
T  10617 cctttgaccctttcttgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaactt 10537  T

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