View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_high_4 (Length: 432)
Name: NF13336_high_4
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 10969462 - 10969045
Alignment:
| Q |
1 |
tcatcaatatggctactacaagtagaatcaacctcaatgacaaaaaccaaactagttgtatttcataattcagattaactgtttaatgtgaaaacagaac |
100 |
Q |
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| T |
10969462 |
tcatcaatatggctactacaagtagaatcaacctcaatgacaaaaaccaaactagttgtatttcataattcagattaactgtttaatgtgaaaacagaac |
10969363 |
T |
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| Q |
101 |
tccatattttttagatgtgggacgggccaaatgaatttggaataaatatagacctataattaggaataagtcgttttgatcagacatctcacattggttt |
200 |
Q |
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| T |
10969362 |
tccatattttttagatgtgggacgggccaaatgaatttggaataaatatagacctataattaggaataagtcgttttgatcagacatctcacattggttt |
10969263 |
T |
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| Q |
201 |
tcacgatgaatcatgattttgaggggagaaaatcaggctgaagaattttgattttggattcttgtaggtcaaaatacttgtgtaggaattttccattgaa |
300 |
Q |
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| T |
10969262 |
tcacgatgaatcatgattttgaggggagaaaatcaggctgaagaattttggttttggattcttgtaggttaaaagtcttgtgtaggaattttccattgaa |
10969163 |
T |
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| Q |
301 |
gttaactgatgtcaacattggaactttaatattctagtaaatgttttattcatttattcgtatttattagtcttatagtttaattgaattctcataatta |
400 |
Q |
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| T |
10969162 |
gttaactgatgtcaacattggaactttaatattctagtaaatgttttattcatttattcgtatttattagtcttatagtttaattgaattctcataatta |
10969063 |
T |
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| Q |
401 |
atacttttttgtatatat |
418 |
Q |
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| T |
10969062 |
atacttttttgtatatat |
10969045 |
T |
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