View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_high_5 (Length: 423)
Name: NF13336_high_5
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 130 - 410
Target Start/End: Complemental strand, 11583213 - 11582926
Alignment:
| Q |
130 |
taggtacagaaaaaggaggaaagatgcgtgcagagataaaattgaaatctgaaa--ttgtaatcaatcatagttgttgcagtgataagttaaatggttca |
227 |
Q |
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| T |
11583213 |
taggtatagaaaaaggaggaaagatgcgtgcagagataaaattgaaatctgaaaaattgtaatcaatcatagttgttgtagtgataagttaaatggttca |
11583114 |
T |
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| Q |
228 |
ctaattggtttttcaaggatactaattattaggcggctagtgtgtcattcactggccaatggtctttgaaagttgataagtggcctttc-aattcaaatg |
326 |
Q |
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| T |
11583113 |
ctaattgctttttcaaggatactaactattaggcggctagtgtgtcattcattggccgatggtctttgaaagttgatatgtggcctttcaaattcaaatt |
11583014 |
T |
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| Q |
327 |
aagtgggagcaatgcaatatagaaacttgtaataggcagcttgga----gaaatgagtgtagaagctattaaatgccattttccatat |
410 |
Q |
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| T |
11583013 |
aagtgggagcaatgcaatatagaaacttgtaataggcagcttggaaacggaaatgagtgcagaagctattaaatgtcatatttcatat |
11582926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 370 - 413
Target Start/End: Complemental strand, 9045358 - 9045315
Alignment:
| Q |
370 |
gagaaatgagtgtagaagctattaaatgccattttccatatgcc |
413 |
Q |
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| T |
9045358 |
gagaaatgagtgtagtagctattaaatgtcattttccttatgcc |
9045315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Complemental strand, 5334491 - 5334449
Alignment:
| Q |
373 |
aaatgagtgtagaagctattaaatgccattttccatatgcctt |
415 |
Q |
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| T |
5334491 |
aaatgagtgtagaagttattaaatgtcattttccttatgcctt |
5334449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 26981256 - 26981216
Alignment:
| Q |
371 |
agaaatgagtgtagaagctattaaatgccattttccatatg |
411 |
Q |
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| T |
26981256 |
agaaatgagtgtagaagttattaaatgtcattttccttatg |
26981216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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