View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13336_low_10 (Length: 330)

Name: NF13336_low_10
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13336_low_10
NF13336_low_10
[»] chr5 (7 HSPs)
chr5 (150-309)||(29043996-29044155)
chr5 (4-102)||(29043896-29043994)
chr5 (77-132)||(20507945-20508000)
chr5 (77-132)||(20504396-20504451)
chr5 (77-122)||(659714-659759)
chr5 (77-118)||(661244-661285)
chr5 (77-122)||(21947771-21947816)
[»] chr6 (1 HSPs)
chr6 (77-132)||(1072339-1072394)
[»] chr3 (3 HSPs)
chr3 (77-132)||(32218837-32218892)
chr3 (77-132)||(48362130-48362185)
chr3 (77-122)||(32264534-32264579)
[»] chr2 (2 HSPs)
chr2 (77-132)||(40032530-40032585)
chr2 (77-109)||(35107019-35107051)
[»] chr1 (1 HSPs)
chr1 (78-132)||(38925942-38925996)
[»] chr4 (3 HSPs)
chr4 (77-132)||(22780896-22780951)
chr4 (77-132)||(22783261-22783316)
chr4 (68-132)||(36921978-36922041)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 150 - 309
Target Start/End: Original strand, 29043996 - 29044155
Alignment:
Q  150 gacatattcttaaaagcaaaaataaatacgaattcaataactcagaaattcaacattctcgcatctcccccaataggcaacctcagatacataaacgaaa 249  Q
    |||| ||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29043996 gacacatttttaaaagcaaaaataagtacgaatttaagaactcagaaattcaacattctcgcatctcccccaatagacaacctcagatacataaacgaaa 29044095  T
Q  250 tcataccggtcctacaattcatatctctagccgcctcaaacaacaacgaaattgacacat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29044096 tcataccggtcctacaattcatatctctagccgcctcaaacaacaacgaaattgacacat 29044155  T

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Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 4 - 102
Target Start/End: Original strand, 29043896 - 29043994
Alignment:
Q  4 gggtagataattctagatgcacaagttcatgaaactaacatccattcaacaattaaatgaatatataattaacgtgagagttaacttaaaattaggtta 102  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  29043896 gggtcgataattctagatgcacaagtttatgaaactaacatccattcaacaattaaatgaatatataattaatgtgagagttaacttaaaatcaggtta 29043994  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 20508000 - 20507945
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||    
T  20508000 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagttgggcaa 20507945  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 20504451 - 20504396
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||    
T  20504451 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatagctgggcaa 20504396  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 659714 - 659759
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgat 122  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  659714 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 659759  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 661285 - 661244
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggta 118  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||    
T  661285 gtgagagttaacttaaaatcaggttctgcagaaatcgtggta 661244  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 21947771 - 21947816
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgat 122  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  21947771 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgat 21947816  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 1072394 - 1072339
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||    
T  1072394 gtgagagttaacttaaaatcaggttctgcagaaatcgtggtacgatggttgggcaa 1072339  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 32218837 - 32218892
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||  ||||||||    
T  32218837 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatgattgggcaa 32218892  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 48362185 - 48362130
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||||| || |||| |||||| ||||| |||||||||    
T  48362185 gtgagagttaacttaaaatcaggttctgtagaaatcgtggcacgatggttgggcaa 48362130  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 32264579 - 32264534
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgat 122  Q
    ||||||||||||||||||| ||||| ||||||| |||||| |||||    
T  32264579 gtgagagttaacttaaaatcaggttttgcagaaatcgtggcacgat 32264534  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 40032585 - 40032530
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||||| ||||||| |||||| ||||| | |||||||    
T  40032585 gtgagagttaacttaaaatcaggttctgcagaaatcgtggcacgatggctgggcaa 40032530  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 35107019 - 35107051
Alignment:
Q  77 gtgagagttaacttaaaattaggttatgcagaa 109  Q
    |||||||||||||||||||||||||||| ||||    
T  35107019 gtgagagttaacttaaaattaggttatggagaa 35107051  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 38925996 - 38925942
Alignment:
Q  78 tgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    |||||||||||||||||| |||||  |||||| |||||||||||| | |||||||    
T  38925996 tgagagttaacttaaaatcaggttccgcagaaatcgtggtacgatggctgggcaa 38925942  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 22780951 - 22780896
Alignment:
Q  77 gtgagagttaacttaaaattagg-ttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||| || ||||||| |||||||||||||| |||||||    
T  22780951 gtgagagttaacttaaaatcaggtttctgcagaa-tcgtggtacgatagctgggcaa 22780896  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 22783316 - 22783261
Alignment:
Q  77 gtgagagttaacttaaaattagg-ttatgcagaactcgtggtacgatagttgggcaa 132  Q
    ||||||||||||||||||| ||| || ||||||| |||||||||||||| |||||||    
T  22783316 gtgagagttaacttaaaatcaggtttctgcagaa-tcgtggtacgatagctgggcaa 22783261  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 36922041 - 36921978
Alignment:
Q  68 ataattaacgtgagagttaacttaaaattaggttatgcagaactcgtggtacgatagttgggcaa 132  Q
    |||| ||| ||||||||||||||||||| ||||| |||| || |||||||||||| | |||||||    
T  36922041 ataaataatgtgagagttaacttaaaatcaggttctgca-aaatcgtggtacgatggctgggcaa 36921978  T

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