View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_low_11 (Length: 299)
Name: NF13336_low_11
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 14744908 - 14745179
Alignment:
| Q |
14 |
gaacggcaacatgaacaatgagaaaggcaaacagtaacaacgcaacagagagaacgatgctnnnnnnntggcaagaatgacgaatataatgatagctgga |
113 |
Q |
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| T |
14744908 |
gaacggcaacatgaacaatgagaaaggcaaacagtaacaacacaacaaagagaacgatgctaaaaaaacggcaagaatgacgaatataatgatagctgga |
14745007 |
T |
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| Q |
114 |
atgcacttgggcaaaaacaa-gatgagtggtaaggggagatgatcagaaacgacgacaa----gagttaaggtaaagatgagttaagaaggcattgagtg |
208 |
Q |
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| T |
14745008 |
atgcacttgggcaaaaacaatgatgagtggtaaggggagatgatcagaaacgacgacaacaacgagtgaaggtaaagatgagttaagaaggcattgagtg |
14745107 |
T |
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| Q |
209 |
accaagaagaagaataaagacgtaaggtttctttttggctgtgttttgagagagaataagtacagaggtttc |
280 |
Q |
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| T |
14745108 |
accaagaagaagaataaagacgtaagggttctttttggctgtgttttgagagagaataagtacagagttttc |
14745179 |
T |
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