View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_low_12 (Length: 266)
Name: NF13336_low_12
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 8006714 - 8006855
Alignment:
| Q |
119 |
gtatatgttccggacctgccataaggccaatcccgcaatgattcatggaccaaacgtccaccagactaaggcacgtctcctgcaaggatacgccaacaac |
218 |
Q |
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| T |
8006714 |
gtatatgttccggacctgccataaggccaatcccgcaatgattcatggaccaaacgtccaccagactaaggcacatctcctgcaaggatacaccaacaac |
8006813 |
T |
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| Q |
219 |
gatgcaccttaccttaattaagcacgaccttgttcatctcac |
260 |
Q |
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| T |
8006814 |
gatgcaccttaccttaattaaacacaaccctgttcatctcac |
8006855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 8006615 - 8006648
Alignment:
| Q |
20 |
tttataagggtaaatttgtataactttaccaggc |
53 |
Q |
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| T |
8006615 |
tttataagggtaaatttgtataactttaccaggc |
8006648 |
T |
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