View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_low_15 (Length: 246)
Name: NF13336_low_15
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 25068737 - 25068867
Alignment:
| Q |
10 |
gaaaagtgacacagaaactaacatttttctttgatgaggcacaattctaaattcatgttattcgtcggtggcggagctaatcgtgttgaatccatttcac |
109 |
Q |
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| T |
25068737 |
gaaaagtgacacagaaactaacatttttctttgatcaggcacaattctaaattcatgttattcgtcggtggcggagctaatcgtgttgaatccatttcac |
25068836 |
T |
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| Q |
110 |
cattcctaaaaaatctagatcaatgtggtcc |
140 |
Q |
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| T |
25068837 |
cattcctaaaaaatgtagatcaatgtggtcc |
25068867 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 25070115 - 25070187
Alignment:
| Q |
174 |
tcagatcggatggttatcgggcatgtacggtgattctgttcgaccttaccattaactattccttcaacatggc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25070115 |
tcagatcggatggttatcgggcatgtacggtgattctgttcggccttaccattaactattccttcaacatggc |
25070187 |
T |
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