View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13336_low_2 (Length: 647)

Name: NF13336_low_2
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13336_low_2
NF13336_low_2
[»] chr3 (10 HSPs)
chr3 (14-318)||(35865953-35866257)
chr3 (14-318)||(35848282-35848586)
chr3 (14-318)||(35774501-35774805)
chr3 (414-647)||(35865624-35865857)
chr3 (14-318)||(35754378-35754682)
chr3 (414-513)||(35848087-35848186)
chr3 (80-274)||(35735583-35735777)
chr3 (422-501)||(35774318-35774397)
chr3 (429-519)||(35754177-35754267)
chr3 (518-597)||(35847985-35848065)
[»] scaffold0891 (2 HSPs)
scaffold0891 (14-318)||(3286-3590)
scaffold0891 (423-502)||(3695-3774)
[»] scaffold2086 (1 HSPs)
scaffold2086 (14-318)||(149-453)
[»] scaffold1996 (2 HSPs)
scaffold1996 (14-318)||(149-453)
scaffold1996 (255-318)||(1083-1146)
[»] scaffold1335 (2 HSPs)
scaffold1335 (414-513)||(77-176)
scaffold1335 (518-597)||(198-278)
[»] chr5 (3 HSPs)
chr5 (233-270)||(26672102-26672139)
chr5 (233-270)||(26901388-26901425)
chr5 (233-270)||(26943700-26943737)
[»] chr6 (2 HSPs)
chr6 (174-206)||(845011-845043)
chr6 (174-206)||(870295-870327)
[»] chr4 (1 HSPs)
chr4 (232-268)||(37399191-37399227)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 35866257 - 35865953
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35866257 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 35866158  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  35866157 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcttgactcattgtggttggaattctacacttgaaactatttc 35866058  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  35866057 ctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaactat 35865958  T
Q  314 gatgt 318  Q
    |||||    
T  35865957 gatgt 35865953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 35848586 - 35848282
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35848586 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 35848487  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  35848486 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcttgactcattgtggttggaattctacacttgaaactatttc 35848387  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
     |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  35848386 ctatggtgtgcctactatttgttggcctttctttgttgagcaacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaactat 35848287  T
Q  314 gatgt 318  Q
    |||||    
T  35848286 gatgt 35848282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 35774805 - 35774501
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    |||||||| ||||| |||||  ||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  35774805 aaattaccttttttatggatattgagaccagatgtagcaatgggtgaagagacttcaactttgccacaagattttctagatgaggttaaggatagaggat 35774706  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35774705 acataactagttggtgctatcaagatcaagtgctttctcatccatcaattgggggattcttaactcattgtggttggaattctacacttgaaactatttc 35774606  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||  ||||||||||||| |||||||||||| ||    
T  35774605 ctatggtgtgcctactatttgttggcctttctttgctgagcaacaaacaaattgttggtatttatgcaagtcttggaaaatagggatggaaattaaccat 35774506  T
Q  314 gatgt 318  Q
    |||||    
T  35774505 gatgt 35774501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 414 - 647
Target Start/End: Complemental strand, 35865857 - 35865624
Alignment:
Q  414 ctacagatgctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc 513  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35865857 ctacagatgctactaatttgggaggatcatcatacattaatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc 35865758  T
Q  514 ggtctattacttttagttaaaacatttctatttgatcatcatcaatcattgtcatgttgactattctgaatttggtgttatcttgcagtggtgcagagag 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35865757 ggtctattacttttagttaaaacatttctatttgatcatcatcaatcattgtcatgttgactattctgaatttggtgttatcttgcattggtgcagagag 35865658  T
Q  614 agtttgtggcnnnnnnncttcataatctttcaac 647  Q
    ||||||||||       |||||||||||||||||    
T  35865657 agtttgtggctttttttcttcataatctttcaac 35865624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 35754682 - 35754378
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  35754682 aaattaccatttttatggataatgagaccagatgtagtaatgggtgaagaaatttcaactttgccacaagattttctagatgaagttaaggatagaggat 35754583  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    |||||||||||||||||   ||||| ||||||||| ||||||||||||||||||  || ||||||||||||||||||||||||||| ||||||| |||||    
T  35754582 acataactagttggtgcatgcaagaccaagtgcttgctcatccatcagttggggtttttctaactcattgtggttggaattctacaattgaaaccatttc 35754483  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
    ||  ||||| ||||||||||||||||| ||||||||||| |||||||||||||| | |||||| ||| ||||||||||| |||| |||||||||||| ||    
T  35754482 ttcaggtgttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaat 35754383  T
Q  314 gatgt 318  Q
    |||||    
T  35754382 gatgt 35754378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 414 - 513
Target Start/End: Complemental strand, 35848186 - 35848087
Alignment:
Q  414 ctacagatgctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||| || ||||||||| ||||||||||    
T  35848186 ctacagatgctactaatttgggaggatcatcatacaataatttccataagttaatcaaagaggttcttcatcacaaggccatttgagttctattataatc 35848087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 80 - 274
Target Start/End: Complemental strand, 35735777 - 35735583
Alignment:
Q  80 caagagtttctagatgaagttaaggatagaggatacataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactc 179  Q
    ||||| ||| |||||||||||||||||||||| || ||||  |  |||||   ||||  | |||| ||| |||||||||||||||||| |||  ||||||    
T  35735777 caagaatttttagatgaagttaaggatagaggttatataataacatggtgtcctcaaagtgaagtacttgctcatccatcagttggggtatttttaactc 35735678  T
Q  180 attgtggttggaattctacacttgaaactatttcttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtat 274  Q
    ||||||||||||||||  ||||||| | ||||||| | |||  |||||  ||| ||||||||||||||||||| |||||||||||||||||||||    
T  35735677 attgtggttggaattcatcacttgagagtatttctgaaggtaagcctatgattggttggcctttctttgctgagcaacaaacaaattgtaggtat 35735583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 422 - 501
Target Start/End: Complemental strand, 35774397 - 35774318
Alignment:
Q  422 gctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagt 501  Q
    |||||||||||||| ||||||||||||||||||||| | || ||||| |||||| |||||||||| || |||||||||||    
T  35774397 gctactaatttgggtggatcatcatacaataatttccagaagttaatcaaagaggttcttcatcataaagctatttgagt 35774318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 429 - 519
Target Start/End: Complemental strand, 35754267 - 35754177
Alignment:
Q  429 atttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatcggtcta 519  Q
    |||| |||||||||||||||| ||||||| |||| ||||||| |||| |||||| |||||||||| |||||||  |||||| || ||||||    
T  35754267 attttggaggatcatcatacactaatttccataagttaattacagaggttcttcgtcacaatgctttttgagtcttattattattggtcta 35754177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 597
Target Start/End: Complemental strand, 35848065 - 35847985
Alignment:
Q  518 tattacttttagttaaaacatttct-atttgatcatcatcaatcattgtcatgttgactattctgaatttggtgttatctt 597  Q
    |||||||||||| ||||| |||||| ||||||| |  ||||||| |||||||  | ||||||||||||||  |||||||||    
T  35848065 tattacttttagctaaaatatttcttatttgattagtatcaatcgttgtcattcttactattctgaatttcatgttatctt 35847985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 225; Significance: 1e-123; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 3286 - 3590
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    |||||||| ||||| |||||  ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  3286 aaattaccttttttatggatattgagaccagatgtagcaatgggtgaagagacttcaactttgccacaagagtttctagatgaagttaaggataaaggat 3385  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    ||||||||||||||||||  |||||  |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  3386 acataactagttggtgctcccaagacgaagtgcttgctcatccatcagttgggggattcttgactcattgtggttggaattctacacttgaaactatttc 3485  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||| ||    
T  3486 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaattaaccat 3585  T
Q  314 gatgt 318  Q
    |||||    
T  3586 gatgt 3590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 423 - 502
Target Start/End: Original strand, 3695 - 3774
Alignment:
Q  423 ctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagtt 502  Q
    ||||| ||||||||||||  ||||||||||||||  |||| || |||| |||  |||||||||| |||||||||||||||    
T  3695 ctactgatttgggaggatattcatacaataattttcataagttgattagagatgttcttcatcaaaatgctatttgagtt 3774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2086 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: scaffold2086
Description:

Target: scaffold2086; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 149 - 453
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||| || || ||||||||||    
T  149 aaattgccatttttatggataatgagaccagatgtagtaatgggtgtggaaacttcatctttgccacaagagtttctagatgaggtaaaagatagaggat 248  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||| ||    
T  249 acataactagttggtgctttcaagatcaagtgcttgctcatccatcggttggagggttcctaactcattgtggttggaattctacacttgaagctatatc 348  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
    || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  349 ttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaaccat 448  T
Q  314 gatgt 318  Q
    |||||    
T  449 gatgt 453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1996 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: scaffold1996
Description:

Target: scaffold1996; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 318
Target Start/End: Original strand, 149 - 453
Alignment:
Q  14 aaattaccatttttgtggattatgagaccagatgtagtaatgggtgaagagacttcatctttgcctcaagagtttctagatgaagttaaggatagaggat 113  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||| || || ||||||||||    
T  149 aaattgccatttttatggataatgagaccagatgtagtaatgggtgtggaaacttcatctttgccacaagagtttctagatgaggtaaaagatagaggat 248  T
Q  114 acataactagttggtgctatcaagatcaagtgctttctcatccatcagttgggggattcctaactcattgtggttggaattctacacttgaaactatttc 213  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||| ||    
T  249 acataactagttggtgctttcaagatcaagtgcttgctcatccatcggttggagggttcctaactcattgtggttggaattctacacttgaagctatatc 348  T
Q  214 ttatggtgtgcctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactat 313  Q
    || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  349 ttctggtatgcctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaaccat 448  T
Q  314 gatgt 318  Q
    |||||    
T  449 gatgt 453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1996; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 1083 - 1146
Alignment:
Q  255 aacaaacaaattgtaggtatttgtgcaacacttggaaaataggtatggaaattaactatgatgt 318  Q
    |||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  1083 aacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaaccatgatgt 1146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 414 - 513
Target Start/End: Original strand, 77 - 176
Alignment:
Q  414 ctacagatgctactaatttgggaggatcatcatacaataatttctataatttaattaaagagcttcttcatcacaatgctatttgagttatattataatc 513  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| ||||||||||||| || ||||||||| ||||||||||    
T  77 ctacagatgctactaatttgggaggatcatcatacaataatttccataagttaatcaaagaggttcttcatcacaaggccatttgagttctattataatc 176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 597
Target Start/End: Original strand, 198 - 278
Alignment:
Q  518 tattacttttagttaaaacatttct-atttgatcatcatcaatcattgtcatgttgactattctgaatttggtgttatctt 597  Q
    |||||||||||| ||||| |||||| ||||||| |  ||||||| |||||||  | ||||||||||||||  |||||||||    
T  198 tattacttttagctaaaatatttcttatttgattagtatcaatcgttgtcattcttactattctgaatttcatgttatctt 278  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 26672139 - 26672102
Alignment:
Q  233 tgttggcctttctttgctgaacaacaaacaaattgtag 270  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  26672139 tgttggcctttttttgctgaacaacaaactaattgtag 26672102  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 26901425 - 26901388
Alignment:
Q  233 tgttggcctttctttgctgaacaacaaacaaattgtag 270  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  26901425 tgttggcctttttttgctgaacaacaaactaattgtag 26901388  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 26943737 - 26943700
Alignment:
Q  233 tgttggcctttctttgctgaacaacaaacaaattgtag 270  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  26943737 tgttggcctttttttgctgaacaacaaactaattgtag 26943700  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 845043 - 845011
Alignment:
Q  174 taactcattgtggttggaattctacacttgaaa 206  Q
    |||||||||||||||||||||| ||||||||||    
T  845043 taactcattgtggttggaattcaacacttgaaa 845011  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 870327 - 870295
Alignment:
Q  174 taactcattgtggttggaattctacacttgaaa 206  Q
    |||||||||||||||||||||| ||||||||||    
T  870327 taactcattgtggttggaattcaacacttgaaa 870295  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 37399227 - 37399191
Alignment:
Q  232 ttgttggcctttctttgctgaacaacaaacaaattgt 268  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  37399227 ttgttggcctttttttgctgaacaacaaactaattgt 37399191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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