View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13336_low_20 (Length: 222)
Name: NF13336_low_20
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 40482492 - 40482694
Alignment:
| Q |
1 |
atacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctgacacat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40482492 |
atacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctgacacat |
40482591 |
T |
|
| Q |
101 |
tcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaacccttgctga |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482592 |
tcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaacccttgctga |
40482691 |
T |
|
| Q |
201 |
agt |
203 |
Q |
| |
|
||| |
|
|
| T |
40482692 |
agt |
40482694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 40513166 - 40513368
Alignment:
| Q |
1 |
atacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctgacacat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40513166 |
atacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctgacacat |
40513265 |
T |
|
| Q |
101 |
tcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaacccttgctga |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513266 |
tcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaacccttgctga |
40513365 |
T |
|
| Q |
201 |
agt |
203 |
Q |
| |
|
||| |
|
|
| T |
40513366 |
agt |
40513368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University