View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_low_3 (Length: 602)
Name: NF13336_low_3
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_3 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 23 - 584
Target Start/End: Original strand, 2402593 - 2403153
Alignment:
| Q |
23 |
aatttgtacccagatattgaaccctatacaactggttttttgaaggtttcagatcttcacactatctactgggagcaatctggaaatccaactggccatg |
122 |
Q |
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| T |
2402593 |
aatttgtacccagatattgaaccctatacaactggttttttgaaggtttcagatcttcacactatctactgggagcaatctggaaatccaactggccatg |
2402692 |
T |
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| Q |
123 |
tgagtagttgtatatttctagactgaattgtcaatttagtgttgaaaataccttaaattcaaaattatccattatgtagcaccgtcacttctgatcaaag |
222 |
Q |
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| T |
2402693 |
tgagtagttgtatatttctagactgaattgtcaatttagtgttgaaaataccttaaattcaaaattatccattatgtagcaccgacacgtctgatcaaag |
2402792 |
T |
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| Q |
223 |
gtgtgtctggtgtttgataagtatactgagactgacacatgggagtacattcaattttgaaatttcatttatgctagggattgaattgtccgacgtctac |
322 |
Q |
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| T |
2402793 |
gcgt-tctggtgtttgataagtatactgagactgacccatgtgattacattcaattttgaaatttcatttatgctagggattgaattgcctgacgtctac |
2402891 |
T |
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| Q |
323 |
aatttcagagactaacttggcgataaaccatttgaagtttttaataacaaagttttaaacttttctttatttttatcgatggagtaggcttatgtgtgtg |
422 |
Q |
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| T |
2402892 |
aatttcagagactaacttggcgataaaccatttgaagtttttaataacaaagttttaaacttttcttgatttttatcgatggagtaggcttatgtgtgta |
2402991 |
T |
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| Q |
423 |
tatattgattgatgaagactggaatgtgaggcactgttatataatggttgtatgtggattgtttattgatgctatgaatgaactgtaatgttgaattgtt |
522 |
Q |
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| T |
2402992 |
tatattgattgatgaagactggaatgtgaggcactgttatataatggtcgtatgtggattgtttattgatgctatgaatgaactgtaatgttgaattgtt |
2403091 |
T |
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| Q |
523 |
ccattaagcctcatgtagaattcaagatgataaattccgtggaccattttattggaattgat |
584 |
Q |
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| T |
2403092 |
ccattaagcctcatgtagaattcaagatgataaattccgtggaccattttattggaattgat |
2403153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 30162 - 30124
Alignment:
| Q |
197 |
tgtagcaccgtcacttctgatcaaaggtgtgtctggtgt |
235 |
Q |
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| T |
30162 |
tgtagtaccgacacttctgatcaaaggtgtgtctggtgt |
30124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 50762 - 50725
Alignment:
| Q |
198 |
gtagcaccgtcacttctgatcaaaggtgtgtctggtgt |
235 |
Q |
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| T |
50762 |
gtagcaccgacacttctgatcaaaggtgtgtccggtgt |
50725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 5816234 - 5816201
Alignment:
| Q |
199 |
tagcaccgtcacttctgatcaaaggtgtgtctgg |
232 |
Q |
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| T |
5816234 |
tagcaccggcacttctgatcaaaggtgtgtctgg |
5816201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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