View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13336_low_6 (Length: 376)
Name: NF13336_low_6
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 25900707 - 25900360
Alignment:
| Q |
20 |
cagtgtcatcttaattaattataattttaaatcggacgaattacctgtttgatgtcgaagtgtgtcttcgtttattgtttgtagattttgctttaacggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25900707 |
cagtgtcatcttaattaattataattttaaatcggacgaattacctgtttgatgtcgaagtgtgtcttcgtttattgtttgtagattttgctttaacggt |
25900608 |
T |
|
| Q |
120 |
cccttctgagttggaatcggttttgaggttgaagactgttaactactttgttacaaggaggccatggcttggtatgtacaacgctgctagctaccatggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25900607 |
cccttctgagttggaatcggttttgaggttgaagactgttaactactttgttacaaggaggccatggcttggtatgtacaacgctgctagctaccatggt |
25900508 |
T |
|
| Q |
220 |
tatttactattgtgttgtattttttgctcagtcagattcacttatagtttttatgtgttttggttaaagatctttatggggttaatgtgagacctgttgc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25900507 |
tatttactattgtgttgtattttttgctcagtcagattcacttatagtttttatgtgttttggttaaagatctttatggggttaatgtgagacctgttgc |
25900408 |
T |
|
| Q |
320 |
gccatttggtagtgcaagtagaaagccttatgttgattcttctctttt |
367 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25900407 |
gccatttggtagtgcaagtagaaagcctcatgttgattcttctctttt |
25900360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 22 - 367
Target Start/End: Original strand, 40067512 - 40067877
Alignment:
| Q |
22 |
gtgtcatcttaattaattataattttaaatcggacgaattacctgtttgatgtcgaagtgtgtcttcgttt-attgtttgtagattttgctttaacggtc |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | |||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
40067512 |
gtgtcatcttaattaataataattttaaatcggatggattacctgtttgatgtcgaactgtatcttcgttttattgtttgtagattttgctttaacagtc |
40067611 |
T |
|
| Q |
121 |
ccttctgagttggaatcggttttgaggttgaagactgttaactactttgttacaaggaggccatggcttggtatgtacaacgctgctagctaccatggtt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
40067612 |
ccttctgagttggaatcggttttgaggttgaagactgttaactactttgttacaaggaggccatggcttggtatgtacaacgct----gctaccatgatt |
40067707 |
T |
|
| Q |
221 |
atttactattg------tgttgtattttttgctca------------------gtcagattcacttatagtttttatgtgttttggttaaagatctttat |
296 |
Q |
| |
|
||||||||||| | ||| |||||||||||| |||| |||| ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
40067708 |
atttactattgaagtactattgaattttttgctcagtctaagatgtttgtttggtcaaattcgcttattgtttttct-tgttttggttaaagatctttac |
40067806 |
T |
|
| Q |
297 |
ggggttaatgtgagacctgttgcgccatttggtagtgcaagtagaaagccttatgttgattcttctctttt |
367 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40067807 |
ggggttaatgtgagacctgtcgcgccttttggaagtgcaagtagaaagcctcatgttgattcttctctttt |
40067877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University