View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13336_low_7 (Length: 372)
Name: NF13336_low_7
Description: NF13336
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13336_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 1482118 - 1482460
Alignment:
| Q |
9 |
gaagaatatttccgtgactaggttatgttaaaaagttagttttttcattgttttctaaacgaataaatatataagtaacaaacctaggaagaagattttg |
108 |
Q |
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| T |
1482118 |
gaagaagatttctgtgattaggttatgttaaaaagttagttttttcatt---ttctaaaggaataaatatataagtaacaaacctaggaagaagattttg |
1482214 |
T |
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| Q |
109 |
tacatatattcattctctcaattgatttcttttaaatcttttgactccgatacaatttccacaattgatttcttttgactctgatacgattttcaccgtt |
208 |
Q |
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| T |
1482215 |
tacatatattcattctctcaattgatttcttttaaatcttttgactccgatacaatttccacaattgatttcttttgactctgatacgattttcaccgtt |
1482314 |
T |
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| Q |
209 |
caggtgatctgaaaattaagggcccaattaaatggagtgaagaattgcatacggggaagccatttggagttaattgttaagtatggatagtttgaataca |
308 |
Q |
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| T |
1482315 |
caggtcatctgaaaattaagggcccaattaaatggagtgaagaattgcatatggggaagccatttggagttaattgttaagtatggatagtttgaataca |
1482414 |
T |
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| Q |
309 |
agctatttactaattactgtaattgataaaatttgttcaaaacaaa |
354 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1482415 |
agctatttactaactactgtaattgataaaatttgttcaaaacaaa |
1482460 |
T |
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