View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13337_high_4 (Length: 390)
Name: NF13337_high_4
Description: NF13337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13337_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 22989952 - 22990328
Alignment:
| Q |
14 |
atcacttccacaacattctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgac |
113 |
Q |
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| T |
22989952 |
atcacttccacaacgttctcaccaacttttttcaggatctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggggac |
22990051 |
T |
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| Q |
114 |
agcgccagtgcggcctgttacaatttatttcaatgaagttgtcaaaatcgaaacactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcg |
213 |
Q |
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| T |
22990052 |
agcgccagagcggcctgtaacaatttatttcaatgaagttgtcaaaatcgaagcactggaagtgtttgcatgtgcgccctttaacaggagtcttgattcg |
22990151 |
T |
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| Q |
214 |
tgtcaatcctatgggacagttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctagtggaagc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
22990152 |
tgtcaatcctatgggacagttaagtgagattcgcgactccccctccatgatatctgaatctgaatattcaagagtagactgaacataatctggaggaagc |
22990251 |
T |
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| Q |
314 |
ttgggcggcagtgatgcatcaacataacgcatataggcaacaagtataatgtagttaccatcgaattcaccgacagc |
390 |
Q |
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| T |
22990252 |
tcgggtggcaaggatgcatcaacataactcatataggcaacaagtataatataattaccatcgaattcaccaacagc |
22990328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 52 - 159
Target Start/End: Complemental strand, 2541660 - 2541553
Alignment:
| Q |
52 |
ctcaaccatgtttctgtcaagacaaatatctgtataggagacatactcattgcaatggcgacagcgccagtgcggcctgttacaatttatttcaatgaag |
151 |
Q |
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||||| ||||||||||||||||| ||||||||||||| ||||| | | |||||||| | ||||||||| ||||| ||| ||||||||| ||||||| |
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| T |
2541660 |
ctcaatcatgtttctgtcaagacgaatatctgtatagcagacaggccgagtgcaatgggggcagcgccaggatggcctcttaaaatttattttaatgaag |
2541561 |
T |
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| Q |
152 |
ttgtcaaa |
159 |
Q |
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|||||||| |
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| T |
2541560 |
ttgtcaaa |
2541553 |
T |
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