View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13337_high_6 (Length: 316)
Name: NF13337_high_6
Description: NF13337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13337_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 17222332 - 17222599
Alignment:
| Q |
20 |
aatgtaatctgggcaatgatcaaactaatatttgaaagagaacctgaaatttattggaaataaaacaatgttgaataaaaaataagttttatcagccatg |
119 |
Q |
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| T |
17222332 |
aatgtaatctgggcaatgatcaaactaatatttgaaagagaacctgaaatttattggaaataaaacaatgttgaataaaaaataagttttatcagccatg |
17222431 |
T |
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| Q |
120 |
catgcatgcaactaatattcacacccttttttcatacaaagcttgcactatccatagattgattccggcgaagccta-nnnnnnnnnnnnnatcgccgcc |
218 |
Q |
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| T |
17222432 |
catgcatgcaactaatattcacacccttttttcatacaaagcttgcactatccatagattgattccggcgaagcctattttttttctttttatcgccgcc |
17222531 |
T |
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| Q |
219 |
gcagacgatggagcattcaagaccacaaataacactaaagcaagagaacaagccattatcaccaccat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17222532 |
gcagacgatggagcattcaagaccacaaataacactaaagcaagagaacaagccattatcaccaccat |
17222599 |
T |
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