View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13337_low_1 (Length: 521)
Name: NF13337_low_1
Description: NF13337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13337_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 29668834 - 29669328
Alignment:
| Q |
11 |
atgaaaaacgccatttcagatcgtaaggaaaccccttctgacgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
110 |
Q |
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| T |
29668834 |
atgaacaacgccatttcagatcgtaaggaaaccccttctgatgacttaatgtcacgtttcatgaagaaacgagacatagacggaaagccaatcaacgcca |
29668933 |
T |
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| Q |
111 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccaaa |
210 |
Q |
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| T |
29668934 |
cgattctacaacacatcatcttaaacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggtcatgaaccatccgaa |
29669033 |
T |
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| Q |
211 |
agttgaggagaaaataatcaaggagttaaccactgttcttgaggaaactcgaagaggggaaaagcggaaatggacagaggatccgcttgatttcagtgaa |
310 |
Q |
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| T |
29669034 |
agttgaggagaaaataatcaaggagttaaccactgttcttgaggaaactcgaggaggggaaaagcggaaatggacagaggatccgcttgatttcagtgaa |
29669133 |
T |
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| Q |
311 |
gcggatcaaatggtttatttgaaagcagcattggcggaaacactgcgattgtatccatcagtgccgcaggatatcaagcaggcggttgtggacgatgttt |
410 |
Q |
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| T |
29669134 |
gcggatcaaatggtttatttgaaagcagcattggcggaaacactgcgtttgtatccatcagtgccgcaggatatcaagcaggcggttgtggacgatgttt |
29669233 |
T |
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| Q |
411 |
tccccgatggaacggtgattccagcgggttcaactgttacatattccatttattctgttgggaggatggagaaaatatggggggaagattgcttg |
505 |
Q |
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| T |
29669234 |
tccccgatggaacggtgattccagcgggttcaactgttacatattccatttattctgttgggaggatggagaaaatatggggggaagattgcttg |
29669328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 502
Target Start/End: Original strand, 25244050 - 25244151
Alignment:
| Q |
401 |
gacgatgttttccccgatggaacggtgattccagcgggttcaactgttacatattccatttattctgttgggaggatggagaaaatatggggggaagatt |
500 |
Q |
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||||||||||| || || ||||||||| |||| ||||||||||| || |||||||| || ||||| ||||| || ||| ||| ||||||| ||||||| |
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| T |
25244050 |
gacgatgttttaccagacggaacggtggttccggcgggttcaacggtgacatattcgatatattcagttggaagaatgaagagtgtatggggtgaagatt |
25244149 |
T |
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| Q |
501 |
gc |
502 |
Q |
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|| |
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| T |
25244150 |
gc |
25244151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 11315133 - 11315194
Alignment:
| Q |
134 |
aacttcatccttgctggaagggacacgtcatcagttgctctcagctggttcttctggctggt |
195 |
Q |
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||||||||||| |||||| | ||||||||||||||||| | ||||||||||| ||| |||| |
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| T |
11315133 |
aacttcatcctagctggacgtgacacgtcatcagttgcgttgagctggttcttttggttggt |
11315194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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