View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13337_low_8 (Length: 315)
Name: NF13337_low_8
Description: NF13337
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13337_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 23944718 - 23945017
Alignment:
| Q |
1 |
tttgaatttggtttattacgacgagagcttgctatgggcagtggcatcaatggtgggaacaccggtgaaggtagacatgcatacgttgcaagtagcgagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23944718 |
tttgaatttggtttattacgacgagagcttgctatgggcagtggcatcaatggtgggaacactggtgaaggtagacatgcatacgttgcaagtagcgagg |
23944817 |
T |
|
| Q |
101 |
ggaaagtttgcaagattatgtgttgaaattgatctcacaaaacctgttgtgggaaaagttggaattaacggagagtggtatcacgttcagtataagggat |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23944818 |
ggaaagtttgcaagattatgcgttgaaattgatctcacaaaacctgttgtgggaaaagttggaattaacggagagtggtatcacgttcagtatgagggat |
23944917 |
T |
|
| Q |
201 |
tgcatgttatttgcactcagtgtggttgttatggccatactttaaaggatcgcgcccccaaacagaaatctttaacagttgaaccagaatcagtggttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23944918 |
tgcatgttatttgcactcagtgtggttgttatggccatactttaaaggattgcgcccccaaaca-caatctttaacagttgaaccagaatcagtggttgt |
23945016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 49577743 - 49577633
Alignment:
| Q |
129 |
ttgatctcacaaaacctgttgtgggaaaagttggaattaacggagagtggtatcacgttcagtataagggattgcatgttatttgcactcagtgtggttg |
228 |
Q |
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||||||||||||| ||||||||||||| ||| ||||| || || ||||||||||| || || ||| |||||||||| |||||||||||| ||||| || |
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| T |
49577743 |
ttgatctcacaaagcctgttgtgggaagagtgggaatcaatggtgagtggtatcatgtccaatatgagggattgcacaatatttgcactcactgtggctg |
49577644 |
T |
|
| Q |
229 |
ttatggccata |
239 |
Q |
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|||||| |||| |
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| T |
49577643 |
ttatggtcata |
49577633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 54817398 - 54817165
Alignment:
| Q |
1 |
tttgaatttggtttattacgacgagagcttgctatgggcagtggcatcaatggtgggaacaccggtgaaggtagacatgcatacgttgcaagtagcgagg |
100 |
Q |
| |
|
||||||| |||||||||| || ||||| ||| ||||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||| |||||| |
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| T |
54817398 |
tttgaatctggtttattatgatgagagtttgttatgggcagtggcatcaatggtgggaacaccagtgaaggtcgacatacatactttaagagttgcgagg |
54817299 |
T |
|
| Q |
101 |
ggaaagtttgcaagattatgtgttgaaattgatctcacaaaacctgttgtgggaaaagttggaattaacggagagtggtatcacgttcagtataagggat |
200 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || ||||| |||||||| ||||||||| | || | |
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| T |
54817298 |
ggaaagtttgcaagattatgcgttgaaatagatctcacaaaacctgttgtaggaaaagtgggaatcaatggagaatggtatcatgttcagtatgaaggtt |
54817199 |
T |
|
| Q |
201 |
tgcatgttatttgcactcagtgtggttgttatgg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
54817198 |
tgcatgttatttgcactcagtgtggttgttatgg |
54817165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 24780252 - 24780142
Alignment:
| Q |
129 |
ttgatctcacaaaacctgttgtgggaaaagttggaattaacggagagtggtatcacgttcagtataagggattgcatgttatttgcactcagtgtggttg |
228 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||||| || || ||||||||||| || || ||| |||||||||| |||||||||||| ||||| || |
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| T |
24780252 |
ttgatctcacaaagcctgttgtgggaagagtgggaatcaatggtgagtggtatcatgtccaatatgagggattgcacaatatttgcactcactgtggctg |
24780153 |
T |
|
| Q |
229 |
ttatggccata |
239 |
Q |
| |
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|||||| |||| |
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|
| T |
24780152 |
ttatggtcata |
24780142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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