View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_high_18 (Length: 400)
Name: NF13338_high_18
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 48287173 - 48287355
Alignment:
| Q |
1 |
aaacttttattaaactatttttcaaaaggtgacaatctgcaagatcagaatatccaaatttcaaccttaaaatgttaatatcaaacnnnnnnnnnnnnnc |
100 |
Q |
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| T |
48287173 |
aaacttttatcaaaccatttttcaaaaggtgacaatctgcaagatcagactatccaaatttcaaccttaaaatgttaatatcaaacaaaaataaaaaa-c |
48287271 |
T |
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| Q |
101 |
tattttaagatttgaactattcaatcttgattgggtggtcccatttcaatgtgtaaactttcaagtagaaacaaaacataaaaa |
184 |
Q |
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| T |
48287272 |
tattttaagatttgaactattcaatcttgattgggtggtcccatttcaatgtgtaaactttcaagtagaaacaaaacataaaaa |
48287355 |
T |
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Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 292 - 387
Target Start/End: Original strand, 48287353 - 48287448
Alignment:
| Q |
292 |
aaaccaccaattcagacatacactacgttttacctataatgtagctttgaaatttgcttggtttattatcatttgtttttggatgaccttgtatat |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48287353 |
aaaccaccaattcagacatacactacgttttacctataatgtagctttgaaatttgcttggtttattatcatttgtttttggatgaccttgtatat |
48287448 |
T |
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