View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_high_20 (Length: 354)
Name: NF13338_high_20
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 2464687 - 2464598
Alignment:
| Q |
3 |
gactaaagtgactatttgctctaatttttatgcagctcatgtataaaatattataatagtctctaaagataactttttaactaaatataa |
92 |
Q |
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| T |
2464687 |
gactaaagtgactatttgctctagtttttatgtagctcatgtataaaatattataatagtctctaaagataactttttaactaaatataa |
2464598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 2464390 - 2464337
Alignment:
| Q |
301 |
tgtgaatatttacgtggacaaaacacaaatttaactctaaaaattattaaataa |
354 |
Q |
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| T |
2464390 |
tgtgaatatttacgtggataaaacacaaatttaactctaaaaattattaaataa |
2464337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 2464491 - 2464447
Alignment:
| Q |
200 |
gggtatatttgacctgatataaaaacacataacaaaagtagagac |
244 |
Q |
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| T |
2464491 |
gggtatatttgacttgatataaaaacacttaacaaaagtagagac |
2464447 |
T |
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