View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13338_high_21 (Length: 348)
Name: NF13338_high_21
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_high_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 48714581 - 48714250
Alignment:
| Q |
1 |
accgattcttttacaagtgaaaaaaggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48714581 |
accgattcttttacaagtgaaaaaaggtagacaggccaaaaagtcaaaatctatttacttcaaatttaattttgacgaagttcattatttacttttgctt |
48714482 |
T |
|
| Q |
101 |
atattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattggggctttatatcc |
200 |
Q |
| |
|
||||||||||| | ||| |||||||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48714481 |
atattcaagaccaaaggaagcgcttagtatcaacatttcatattgaaaaacgtgagaattgataattatcatcataccttaaaattggggctttatatcc |
48714382 |
T |
|
| Q |
201 |
tacaaaacaaattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagtcatagat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48714381 |
tacaaaacaaattaagcatgtgaagacaaaaactgttaaacatgtgtagatgcattcaatatatgaaaccatgacctcctcaaaataatcagccatagat |
48714282 |
T |
|
| Q |
301 |
aagaaggaaaggcaatagaacagtaccaaaaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
48714281 |
aagaaggaaaggcaatagaacagtaccaaaaa |
48714250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 225
Target Start/End: Complemental strand, 47165824 - 47165691
Alignment:
| Q |
91 |
acttttgcttatattcaagactagagggagcgcttaatatcagcatttcatattgaaaaacgtgagaatttgtaatcatcatcataccttaaaattgggg |
190 |
Q |
| |
|
||||||| | ||||| ||||| |||| ||||| ||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47165824 |
acttttgttcatatttaagaccagagagagcgtttagtatcaacatttcatattgaaaa-cgtgagaattggtaatcatcatcataccttaaaattgggg |
47165726 |
T |
|
| Q |
191 |
ctttatatcctacaaaacaaattaagcatgtgaag |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |
|
|
| T |
47165725 |
ctttatatcctacaaaacaaattaagcaagtgaag |
47165691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 47165666 - 47165602
Alignment:
| Q |
226 |
acaaaaactgttaaacatgtg---tagatgcattcaatatatgaaaccatgacctcctcaaaata |
287 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
47165666 |
acaaaaactgttcaacatgtgatgtagatgcattcaatatatgaaaccatgacatactcaaaata |
47165602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 48696137 - 48696083
Alignment:
| Q |
171 |
atcataccttaaaattggggctttatatcctacaaaacaaattaagcatgtgaag |
225 |
Q |
| |
|
||||||||||| |||||| | || |||||||||||||||||| |||||||||||| |
|
|
| T |
48696137 |
atcataccttataattggagattcatatcctacaaaacaaataaagcatgtgaag |
48696083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University