View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13338_high_24 (Length: 304)
Name: NF13338_high_24
Description: NF13338
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13338_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 24623732 - 24623451
Alignment:
| Q |
20 |
ttcacgacattgcttatcaagaggtaagtttcaatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcatacaggatctagaa |
119 |
Q |
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| T |
24623732 |
ttcacgacattgcttatcaagaggtaaatttcaatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcatacaggatctataa |
24623633 |
T |
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| Q |
120 |
tagatattaatctaatttaatttaatgatattgctatagtaattagtctaagatattggtctgttcaactaaaacattattaaccgaaactgaaacatta |
219 |
Q |
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| T |
24623632 |
tagaaattaatctaatttaatttaatgatattgctatagtacttagtctaagatattggcctgttcaactaaaacattattaaccgaaactgaaacaata |
24623533 |
T |
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| Q |
220 |
t-------taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctatg |
294 |
Q |
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| T |
24623532 |
taaatagataaccttgttagtttttagctgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgactatg |
24623451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 294
Target Start/End: Complemental strand, 46628235 - 46628163
Alignment:
| Q |
221 |
taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctatg |
294 |
Q |
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| T |
46628235 |
taaccttgttag-ttttaactgatctttatgtcaagtcagtagtctgcttgagaaatcttgcctcttgtctatg |
46628163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 9750028 - 9750143
Alignment:
| Q |
175 |
ttggtctgttcaactaaaacattattaaccgaaactgaaacattat---taaccttgttaggttttagttgatctttatgtcaagtcagtagcctgcttg |
271 |
Q |
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| T |
9750028 |
ttggactgttccactagaacattattaactgaaaccgaaacaatataaataaccttgttagtttttaactgatctttttgtcaagtcagtagtctgcttg |
9750127 |
T |
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| Q |
272 |
agaaattttgcctctt |
287 |
Q |
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| T |
9750128 |
agaaatcttgcctctt |
9750143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 141 - 294
Target Start/End: Original strand, 9009215 - 9009371
Alignment:
| Q |
141 |
ttaatgatattgctatagtaattagtctaagatattggtctgttcaactaaaacattattaaccgaaactgaaacattat---taaccttgttaggtttt |
237 |
Q |
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| T |
9009215 |
ttaatgatattgttataaagcttagtctaagatattgcactgttccactaaaacattatttactacaactgaaacaatatgaataaccttcttagttctt |
9009314 |
T |
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| Q |
238 |
agttgatctttatgtcaagtcagtagcctgcttgagaaattttgcctcttgcctatg |
294 |
Q |
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| T |
9009315 |
aactgatcttaaagtcaagtcagtagtttgcttgagaaatcttgcctcttgtctatg |
9009371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 29980765 - 29980708
Alignment:
| Q |
52 |
aatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcataca |
109 |
Q |
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| T |
29980765 |
aatttctaactaatgatattgttataaaacttggacattactgtaatggtttcataca |
29980708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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